Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:57 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SigCheck package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SigCheck.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1786/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SigCheck 2.26.0 (landing page) Rory Stark
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SigCheck |
Version: 2.26.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:SigCheck.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings SigCheck_2.26.0.tar.gz |
StartedAt: 2022-04-12 09:22:22 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 09:27:47 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 325.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SigCheck.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:SigCheck.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings SigCheck_2.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/SigCheck.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SigCheck/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SigCheck’ version ‘2.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SigCheck’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE sigCheckKnown: no visible binding for global variable ‘knownSignatures’ Undefined global functions or variables: knownSignatures * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed sigCheckAll 101.089 8.417 109.518 sigCheckKnown 48.115 2.048 50.165 sigCheckPermuted 12.849 0.672 13.521 sigCheck 11.663 1.023 12.687 sigCheckPlot 10.214 0.916 11.130 sigCheckRandom 7.988 0.464 8.452 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.14-bioc/meat/SigCheck.Rcheck/00check.log’ for details.
SigCheck.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL SigCheck ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘SigCheck’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘signature’ in package ‘SigCheck’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SigCheck)
SigCheck.Rcheck/SigCheck-Ex.timings
name | user | system | elapsed | |
SigCheckObject-class | 0.002 | 0.000 | 0.002 | |
classifyResults | 0.029 | 0.000 | 0.030 | |
knownSignatures | 0.014 | 0.000 | 0.014 | |
nkiResults | 0.015 | 0.000 | 0.015 | |
sigCheck | 11.663 | 1.023 | 12.687 | |
sigCheckAll | 101.089 | 8.417 | 109.518 | |
sigCheckKnown | 48.115 | 2.048 | 50.165 | |
sigCheckPermuted | 12.849 | 0.672 | 13.521 | |
sigCheckPlot | 10.214 | 0.916 | 11.130 | |
sigCheckRandom | 7.988 | 0.464 | 8.452 | |