| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:26 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the StructuralVariantAnnotation package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/StructuralVariantAnnotation.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1897/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| StructuralVariantAnnotation 1.10.1 (landing page) Daniel Cameron
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: StructuralVariantAnnotation |
| Version: 1.10.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/StructuralVariantAnnotation_1.10.1.tar.gz && rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL StructuralVariantAnnotation_1.10.1.zip && rm StructuralVariantAnnotation_1.10.1.tar.gz StructuralVariantAnnotation_1.10.1.zip |
| StartedAt: 2022-04-12 06:17:14 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:18:47 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 93.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/StructuralVariantAnnotation_1.10.1.tar.gz && rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL StructuralVariantAnnotation_1.10.1.zip && rm StructuralVariantAnnotation_1.10.1.tar.gz StructuralVariantAnnotation_1.10.1.zip
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install for i386
* installing *source* package 'StructuralVariantAnnotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'StructuralVariantAnnotation'
finding HTML links ... done
StructuralVariantAnnotation html
align_breakpoints html
breakendRanges html
breakpointGRangesToVCF html
breakpointRanges html
breakpointgr2bedpe html
calculateReferenceHomology html
countBreakpointOverlaps html
elementExtract html
extractBreakpointSequence html
extractReferenceSequence html
findBreakpointOverlaps html
findInsDupOverlaps html
findTransitiveCalls html
hasPartner html
isStructural html
isSymbolic html
numtDetect html
pairs2breakpointgr html
partner html
rtDetect html
simpleEventLength html
simpleEventType html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'StructuralVariantAnnotation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'StructuralVariantAnnotation' as StructuralVariantAnnotation_1.10.1.zip
* DONE (StructuralVariantAnnotation)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'StructuralVariantAnnotation' successfully unpacked and MD5 sums checked