Sandro Morganella
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/VegaMC |
| git_branch: RELEASE_3_14 |
| git_last_commit: 843928d |
| git_last_commit_date: 2021-10-26 12:02:39 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:33 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the VegaMC package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VegaMC.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2045/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| VegaMC 3.32.0 (landing page) Sandro Morganella
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: VegaMC |
| Version: 3.32.0 |
| Command: rm -rf VegaMC.buildbin-libdir && mkdir VegaMC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VegaMC.buildbin-libdir VegaMC_3.32.0.tar.gz |
| StartedAt: 2022-04-13 07:19:08 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 07:19:45 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 37.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: VegaMC_3.32.0.zip |
| PackageFileSize: 1.768 MiB |
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### Running command:
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### rm -rf VegaMC.buildbin-libdir && mkdir VegaMC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VegaMC.buildbin-libdir VegaMC_3.32.0.tar.gz
###
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install for i386
* installing *source* package 'VegaMC' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
char *elem, *brkt;
^~~~
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized in this function [-Wmaybe-uninitialized]
temp_probe->chromosome = chr;
~~~~~~~~~~~~~~~~~~~~~~~^~~~~
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized in this function [-Wmaybe-uninitialized]
temp_probe->position = position;
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized in this function [-Wmaybe-uninitialized]
prev_chr = temp_probe->chromosome;
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:466:38: warning: 'first_seg' may be used uninitialized in this function [-Wmaybe-uninitialized]
seg_chromosomes[j] = (tmp->chromosome) + 1;
~~~~^~~~~~~~~~~~~
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized in this function [-Wmaybe-uninitialized]
prev_seg->next = tmp;
~~~~~~~~~~~~~~~^~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sort_data.c -o sort_data.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
node deleted;
^~~~~~~
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
int i, j, index;
^~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/VegaMC.buildbin-libdir/00LOCK-VegaMC/00new/VegaMC/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'VegaMC'
finding HTML links ... done
VegaMC-package html
sortData html
vegaMC-methods html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/VegaMC.buildbin-libdir/00LOCK-VegaMC/00new/VegaMC/help/vegaMC.html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'VegaMC' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
char *elem, *brkt;
^~~~
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized in this function [-Wmaybe-uninitialized]
temp_probe->chromosome = chr;
~~~~~~~~~~~~~~~~~~~~~~~^~~~~
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized in this function [-Wmaybe-uninitialized]
temp_probe->position = position;
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized in this function [-Wmaybe-uninitialized]
prev_chr = temp_probe->chromosome;
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:466:38: warning: 'first_seg' may be used uninitialized in this function [-Wmaybe-uninitialized]
seg_chromosomes[j] = (tmp->chromosome) + 1;
~~~~^~~~~~~~~~~~~
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized in this function [-Wmaybe-uninitialized]
prev_seg->next = tmp;
~~~~~~~~~~~~~~~^~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sort_data.c -o sort_data.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
node deleted;
^~~~~~~
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
int i, j, index;
^~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/VegaMC.buildbin-libdir/VegaMC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'VegaMC' as VegaMC_3.32.0.zip
* DONE (VegaMC)