| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:10 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the aroma.light package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/aroma.light.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 77/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| aroma.light 3.24.0 (landing page) Henrik Bengtsson
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: aroma.light |
| Version: 3.24.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/aroma.light_3.24.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.24.0.zip && rm aroma.light_3.24.0.tar.gz aroma.light_3.24.0.zip |
| StartedAt: 2022-04-12 04:39:26 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:41:31 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 125.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/aroma.light_3.24.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.24.0.zip && rm aroma.light_3.24.0.tar.gz aroma.light_3.24.0.zip
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install for i386
* installing *source* package 'aroma.light' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'aroma.light'
finding HTML links ... done
1._Calibration_and_Normalization html
Non-documented_objects html
aroma.light-package html
averageQuantile html
backtransformAffine html
backtransformPrincipalCurve html
calibrateMultiscan html
callNaiveGenotypes html
distanceBetweenLines html
findPeaksAndValleys html
fitIWPCA html
fitNaiveGenotypes html
fitPrincipalCurve html
fitXYCurve html
iwpca html
likelihood.smooth.spline html
medianPolish html
normalizeAffine html
normalizeAverage html
normalizeCurveFit html
normalizeDifferencesToAverage html
normalizeFragmentLength html
normalizeQuantileRank html
normalizeQuantileRank.matrix html
normalizeQuantileSpline html
normalizeTumorBoost html
pairedAlleleSpecificCopyNumbers html
plotDensity html
plotMvsA html
plotMvsAPairs html
plotMvsMPairs html
plotXYCurve html
print.SmoothSplineLikelihood html
robustSmoothSpline html
sampleCorrelations html
sampleTuples html
wpca html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'aroma.light' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aroma.light' as aroma.light_3.24.0.zip
* DONE (aroma.light)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'aroma.light' successfully unpacked and MD5 sums checked