Jack Fu
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/ballgown |
| git_branch: RELEASE_3_14 |
| git_last_commit: 4f1dda8 |
| git_last_commit_date: 2021-10-26 12:14:54 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:11 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ballgown package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ballgown.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 109/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ballgown 2.26.0 (landing page) Jack Fu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ballgown |
| Version: 2.26.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ballgown_2.26.0.tar.gz && rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ballgown.buildbin-libdir ballgown_2.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ballgown_2.26.0.zip && rm ballgown_2.26.0.tar.gz ballgown_2.26.0.zip |
| StartedAt: 2022-04-12 06:55:23 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:58:20 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 176.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ballgown_2.26.0.tar.gz && rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ballgown.buildbin-libdir ballgown_2.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ballgown_2.26.0.zip && rm ballgown_2.26.0.tar.gz ballgown_2.26.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 3349k 2 99k 0 0 515k 0 0:00:06 --:--:-- 0:00:06 515k
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100 3349k 100 3349k 0 0 1874k 0 0:00:01 0:00:01 --:--:-- 1874k
install for i386
* installing *source* package 'ballgown' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'structure' in package 'ballgown'
** help
*** installing help indices
converting help for package 'ballgown'
finding HTML links ... done
annotate_assembly html
ballgown-class html
ballgown-constructor html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/ballgown.buildbin-libdir/00LOCK-ballgown/00new/ballgown/help/ballgown.html
ballgown-package html
ballgownrsem html
bg html
checkAssembledTx html
clusterTranscripts html
collapseTranscripts html
contains html
dirs html
eexpr html
expr-replace html
expr html
exprfilter html
geneIDs html
geneNames html
getAttributeField html
getGenes html
gexpr html
gffRead html
gffReadGR html
iexpr html
indexes-replace html
indexes html
last html
mergedDate html
pData-replace html
pData html
pctOverlap html
plotLatentTranscripts html
plotMeans html
plotTranscripts html
sampleNames html
seqnames html
stattest html
structure html
subset html
tGene html
texpr html
transcriptIDs html
transcriptNames html
writeFiles html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ballgown' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ballgown' as ballgown_2.26.0.zip
* DONE (ballgown)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ballgown' successfully unpacked and MD5 sums checked