Lindsay Rutter
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/bigPint |
| git_branch: RELEASE_3_14 |
| git_last_commit: 8efcfe7 |
| git_last_commit_date: 2021-10-26 12:49:05 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:13 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the bigPint package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bigPint.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 149/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bigPint 1.10.0 (landing page) Lindsay Rutter
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: bigPint |
| Version: 1.10.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:bigPint.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings bigPint_1.10.0.tar.gz |
| StartedAt: 2022-04-12 16:11:36 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 16:18:20 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 403.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: bigPint.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:bigPint.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings bigPint_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/bigPint.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bigPint/DESCRIPTION' ... OK
* this is package 'bigPint' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bigPint' can be installed ... OK
* checking installed package size ... NOTE
installed size is 22.7Mb
sub-directories of 1Mb or more:
data 11.0Mb
help 3.2Mb
shiny-dashboards 5.0Mb
shiny-examples 3.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
LazyData DB of 11.0 MB without LazyDataCompression set
See ยง1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotSM 44.33 0.24 44.58
plotClusters 14.46 1.06 15.51
plotLitre 4.36 1.38 5.79
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotSM 48.09 0.50 48.94
plotClusters 13.81 0.63 14.47
plotLitre 4.25 0.98 5.32
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/bigPint.Rcheck/00check.log'
for details.
bigPint.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/bigPint_1.10.0.tar.gz && rm -rf bigPint.buildbin-libdir && mkdir bigPint.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bigPint.buildbin-libdir bigPint_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL bigPint_1.10.0.zip && rm bigPint_1.10.0.tar.gz bigPint_1.10.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 56.8M 0 15985 0 0 135k 0 0:07:10 --:--:-- 0:07:10 135k
3 56.8M 3 2007k 0 0 1798k 0 0:00:32 0:00:01 0:00:31 1798k
8 56.8M 8 4834k 0 0 2319k 0 0:00:25 0:00:02 0:00:23 2319k
12 56.8M 12 7473k 0 0 2422k 0 0:00:24 0:00:03 0:00:21 2422k
17 56.8M 17 10.1M 0 0 2530k 0 0:00:23 0:00:04 0:00:19 2530k
23 56.8M 23 13.5M 0 0 2717k 0 0:00:21 0:00:05 0:00:16 2777k
28 56.8M 28 16.0M 0 0 2694k 0 0:00:21 0:00:06 0:00:15 2895k
34 56.8M 34 19.4M 0 0 2808k 0 0:00:20 0:00:07 0:00:13 3011k
41 56.8M 41 23.8M 0 0 3010k 0 0:00:19 0:00:08 0:00:11 3372k
46 56.8M 46 26.3M 0 0 2958k 0 0:00:19 0:00:09 0:00:10 3307k
48 56.8M 48 27.5M 0 0 2785k 0 0:00:20 0:00:10 0:00:10 2854k
52 56.8M 52 29.5M 0 0 2726k 0 0:00:21 0:00:11 0:00:10 2764k
55 56.8M 55 31.4M 0 0 2661k 0 0:00:21 0:00:12 0:00:09 2452k
59 56.8M 59 33.7M 0 0 2645k 0 0:00:22 0:00:13 0:00:09 2051k
65 56.8M 65 37.0M 0 0 2692k 0 0:00:21 0:00:14 0:00:07 2207k
72 56.8M 72 41.1M 0 0 2789k 0 0:00:20 0:00:15 0:00:05 2796k
77 56.8M 77 43.8M 0 0 2789k 0 0:00:20 0:00:16 0:00:04 2929k
80 56.8M 80 45.9M 0 0 2749k 0 0:00:21 0:00:17 0:00:04 2962k
83 56.8M 83 47.7M 0 0 2703k 0 0:00:21 0:00:18 0:00:03 2857k
87 56.8M 87 49.5M 0 0 2659k 0 0:00:21 0:00:19 0:00:02 2567k
90 56.8M 90 51.5M 0 0 2630k 0 0:00:22 0:00:20 0:00:02 2149k
95 56.8M 95 54.5M 0 0 2648k 0 0:00:21 0:00:21 --:--:-- 2195k
100 56.8M 100 56.8M 0 0 2682k 0 0:00:21 0:00:21 --:--:-- 2433k
install for i386
* installing *source* package 'bigPint' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'bigPint'
finding HTML links ... done
bigPint html
convertSEPair html
convertSESubsetGenes html
plotClusters html
plotLitre html
plotLitreApp html
plotPCP html
plotPCPApp html
plotSM html
plotSMApp html
plotVolcano html
plotVolcanoApp html
se_soybean_cn_sub html
se_soybean_ir_sub html
soybean_cn html
soybean_cn_metrics html
soybean_cn_sub html
soybean_cn_sub_metrics html
soybean_ir html
soybean_ir_metrics html
soybean_ir_sub html
soybean_ir_sub_metrics html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'bigPint' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bigPint' as bigPint_1.10.0.zip
* DONE (bigPint)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'bigPint' successfully unpacked and MD5 sums checked
|
bigPint.Rcheck/tests_i386/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("bigPint")
RUNIT TEST PROTOCOL -- Tue Apr 12 16:18:04 2022
***********************************************
Number of test functions: 5
Number of errors: 0
Number of failures: 0
1 Test Suite :
bigPint RUnit Tests - 5 test functions, 0 errors, 0 failures
Number of test functions: 5
Number of errors: 0
Number of failures: 0
Warning messages:
1: In xtfrm.data.frame(x) : cannot xtfrm data frames
2: In xtfrm.data.frame(x) : cannot xtfrm data frames
3: In xtfrm.data.frame(x) : cannot xtfrm data frames
4: In xtfrm.data.frame(x) : cannot xtfrm data frames
5: In xtfrm.data.frame(x) : cannot xtfrm data frames
6: In xtfrm.data.frame(x) : cannot xtfrm data frames
7: In xtfrm.data.frame(x) : cannot xtfrm data frames
8: In xtfrm.data.frame(x) : cannot xtfrm data frames
>
> proc.time()
user system elapsed
7.68 0.67 8.37
|
bigPint.Rcheck/tests_x64/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("bigPint")
RUNIT TEST PROTOCOL -- Tue Apr 12 16:18:12 2022
***********************************************
Number of test functions: 5
Number of errors: 0
Number of failures: 0
1 Test Suite :
bigPint RUnit Tests - 5 test functions, 0 errors, 0 failures
Number of test functions: 5
Number of errors: 0
Number of failures: 0
Warning messages:
1: In xtfrm.data.frame(x) : cannot xtfrm data frames
2: In xtfrm.data.frame(x) : cannot xtfrm data frames
3: In xtfrm.data.frame(x) : cannot xtfrm data frames
4: In xtfrm.data.frame(x) : cannot xtfrm data frames
5: In xtfrm.data.frame(x) : cannot xtfrm data frames
6: In xtfrm.data.frame(x) : cannot xtfrm data frames
7: In xtfrm.data.frame(x) : cannot xtfrm data frames
8: In xtfrm.data.frame(x) : cannot xtfrm data frames
>
> proc.time()
user system elapsed
7.18 0.37 7.54
|
|
bigPint.Rcheck/examples_i386/bigPint-Ex.timings
|
bigPint.Rcheck/examples_x64/bigPint-Ex.timings
|