| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:16 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the breakpointR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/breakpointR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 214/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| breakpointR 1.12.0 (landing page) David Porubsky
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: breakpointR |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/breakpointR_1.12.0.tar.gz && rm -rf breakpointR.buildbin-libdir && mkdir breakpointR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breakpointR.buildbin-libdir breakpointR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL breakpointR_1.12.0.zip && rm breakpointR_1.12.0.tar.gz breakpointR_1.12.0.zip |
| StartedAt: 2022-04-12 05:33:04 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:34:20 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 76.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/breakpointR_1.12.0.tar.gz && rm -rf breakpointR.buildbin-libdir && mkdir breakpointR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breakpointR.buildbin-libdir breakpointR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL breakpointR_1.12.0.zip && rm breakpointR_1.12.0.tar.gz breakpointR_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 736k 100 736k 0 0 585k 0 0:00:01 0:00:01 --:--:-- 585k
100 736k 100 736k 0 0 585k 0 0:00:01 0:00:01 --:--:-- 585k
install for i386
* installing *source* package 'breakpointR' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'breakpointR'
finding HTML links ... done
BreakPoint html
finding level-2 HTML links ... done
breakSeekr html
breakpointR-package html
breakpointr html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/breakpointR.buildbin-libdir/00LOCK-breakpointR/00new/breakpointR/help/breakpointr.html
breakpointr2UCSC html
collapseBins html
confidenceInterval html
confidenceInterval.binomial html
createCompositeFile html
deltaWCalculator html
deltaWCalculatorVariousWindows html
exportRegions html
genotype.binom html
genotype.fisher html
genotyping html
hotspotter html
insertchr html
loadFromFiles html
plotBreakpoints html
plotBreakpointsPerChr html
plotHeatmap html
ranges2UCSC html
readBamFileAsGRanges html
readConfig html
removeDoubleSCEs html
removeReadPileupSpikes html
runBreakpointr html
summarizeBreaks html
synchronizeReadDir html
transCoord html
writeConfig html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'breakpointR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'breakpointR' as breakpointR_1.12.0.zip
* DONE (breakpointR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'breakpointR' successfully unpacked and MD5 sums checked