Stian Lågstad
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/chimeraviz |
| git_branch: RELEASE_3_14 |
| git_last_commit: 2e8573d |
| git_last_commit_date: 2021-10-26 12:31:52 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:19 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the chimeraviz package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chimeraviz.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 297/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| chimeraviz 1.20.0 (landing page) Stian Lågstad
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: chimeraviz |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/chimeraviz_1.20.0.tar.gz && rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL chimeraviz_1.20.0.zip && rm chimeraviz_1.20.0.tar.gz chimeraviz_1.20.0.zip |
| StartedAt: 2022-04-12 07:16:12 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:18:53 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 161.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/chimeraviz_1.20.0.tar.gz && rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL chimeraviz_1.20.0.zip && rm chimeraviz_1.20.0.tar.gz chimeraviz_1.20.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
46 2627k 46 1233k 0 0 1505k 0 0:00:01 --:--:-- 0:00:01 1506k
100 2627k 100 2627k 0 0 1767k 0 0:00:01 0:00:01 --:--:-- 1768k
install for i386
* installing *source* package 'chimeraviz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'chimeraviz'
finding HTML links ... done
Fusion-class html
PartnerGene-class html
add_fusion_reads_alignment html
chimeraviz-internals-fusions_to_gene_label_data
html
chimeraviz-internals-fusions_to_link_data
html
chimeraviz-internals-scaleListToInterval
html
chimeraviz html
create_fusion_report html
decide_transcript_category html
down_shift html
downstream_partner_gene html
fetch_reads_from_fastq html
fusion_spanning_reads_count html
fusion_split_reads_count html
fusion_to_data_frame html
get_ensembl_ids html
get_fusion_by_chromosome html
get_fusion_by_gene_name html
get_fusion_by_id html
get_transcripts_ensembl_db html
import_aeron html
import_chimpipe html
import_defuse html
import_ericscript html
import_function_non_ucsc html
import_fusioncatcher html
import_fusionmap html
import_infusion html
import_jaffa html
import_oncofuse html
import_prada html
import_soapfuse html
import_squid html
import_starfusion html
partner_gene_ensembl_id html
partner_gene_junction_sequence html
plot_circle html
plot_fusion html
plot_fusion_reads html
plot_fusion_transcript html
plot_fusion_transcript_with_protein_domain
html
plot_fusion_transcripts_graph html
plot_transcripts html
raw_Homo_sapiens.GRCh37.74 html
raw_chimpipe html
raw_cytobandhg19 html
raw_cytobandhg38 html
raw_defuse html
raw_ericscript html
raw_fusion5267proteindomains html
raw_fusion5267reads html
raw_fusion5267readsBedGraph html
raw_fusioncatcher html
raw_fusionmap html
raw_infusion html
raw_jaffa html
raw_oncofuse html
raw_prada html
raw_soapfuse html
raw_starfusion html
select_transcript html
show-Fusion-method html
show-PartnerGene-method html
split_on_utr_and_add_feature html
upstream_partner_gene html
write_fusion_reference html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'chimeraviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chimeraviz' as chimeraviz_1.20.0.zip
* DONE (chimeraviz)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'chimeraviz' successfully unpacked and MD5 sums checked