Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:20 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the cliqueMS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cliqueMS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 330/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cliqueMS 1.8.0 (landing page) Oriol Senan Campos
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: cliqueMS |
Version: 1.8.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cliqueMS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings cliqueMS_1.8.0.tar.gz |
StartedAt: 2022-04-12 17:24:44 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 17:36:34 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 710.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cliqueMS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cliqueMS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings cliqueMS_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/cliqueMS.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'cliqueMS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cliqueMS' version '1.8.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cliqueMS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'MSnbase' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/cliqueMS/libs/i386/cliqueMS.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/cliqueMS/libs/x64/cliqueMS.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed createNetwork 4.19 0.05 31.49 anClique-class 2.60 0.08 15.03 createanClique 2.62 0.04 32.19 computeCliques 2.25 0.31 15.53 anClique 2.22 0.03 20.06 getCliques 1.83 0.00 15.47 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed createNetwork 4.58 0.04 39.41 createanClique 2.81 0.07 35.09 anClique-class 2.60 0.05 20.25 computeCliques 2.27 0.14 16.34 anClique 2.10 0.00 15.84 getCliques 1.78 0.02 15.97 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/cliqueMS.Rcheck/00check.log' for details.
cliqueMS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cliqueMS_1.8.0.tar.gz && rm -rf cliqueMS.buildbin-libdir && mkdir cliqueMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cliqueMS.buildbin-libdir cliqueMS_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cliqueMS_1.8.0.zip && rm cliqueMS_1.8.0.tar.gz cliqueMS_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 18 560k 18 101k 0 0 528k 0 0:00:01 --:--:-- 0:00:01 528k 100 560k 100 560k 0 0 1065k 0 --:--:-- --:--:-- --:--:-- 1065k install for i386 * installing *source* package 'cliqueMS' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findAnnotationR.cpp -o findAnnotationR.o In file included from findAnnotationR.cpp:1: annotationCliqueMSR.h: In function 'std::vector<std::pair<double, double> > sortMass(annotData&, int, std::unordered_map<double, std::pair<double, double> >, int)': annotationCliqueMSR.h:440:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<double, double> >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(id < allM.size()) // not add more masses in case that for that feature are less than "n" top masses ~~~^~~~~~~~~~~~~ annotationCliqueMSR.h: In function 'std::unordered_set<double> getTopScoringMasses(annotData&, int, rawadList, int, int, double)': annotationCliqueMSR.h:476:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<double, double> >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(id < allM.size()) // not add more masses in case that there are less than "n" top masses ~~~^~~~~~~~~~~~~ annotationCliqueMSR.h: In function 'std::vector<int> sortAnnotations(std::unordered_map<int, Annotation>&, int)': annotationCliqueMSR.h:725:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<double, int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(id < allAn.size() ) ~~~^~~~~~~~~~~~~~ annotationCliqueMSR.h: In function 'double computeMaxScore(std::vector<double>&, int, double)': annotationCliqueMSR.h:739:24: warning: 'completeroundscore' may be used uninitialized in this function [-Wmaybe-uninitialized] completeroundscore += *ritv; ~~~~~~~~~~~~~~~~~~~^~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findCliquesR.cpp -o findCliquesR.o In file included from findCliquesR.cpp:2: networkCliqueMSR.h: In function 'Edges createEdges(Rcpp::DataFrame)': networkCliqueMSR.h:38:37: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for(unsigned int index = 0; index < vnode1.size(); index++) { ~~~~~~^~~~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findIsotopesR.cpp -o findIsotopesR.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o cliqueMS.dll tmp.def RcppExports.o findAnnotationR.o findCliquesR.o findIsotopesR.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/cliqueMS.buildbin-libdir/00LOCK-cliqueMS/00new/cliqueMS/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cliqueMS' finding HTML links ... done anClique-class html anClique html cliqueMS html computeCliques html createNetwork html createanClique html ex.cliqueGroups html getAnnotation html getCliques html getIsotopes html negative.adinfo html positive.adinfo html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cliqueMS' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findAnnotationR.cpp -o findAnnotationR.o In file included from findAnnotationR.cpp:1: annotationCliqueMSR.h: In function 'std::vector<std::pair<double, double> > sortMass(annotData&, int, std::unordered_map<double, std::pair<double, double> >, int)': annotationCliqueMSR.h:440:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<double, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] if(id < allM.size()) // not add more masses in case that for that feature are less than "n" top masses ~~~^~~~~~~~~~~~~ annotationCliqueMSR.h: In function 'std::unordered_set<double> getTopScoringMasses(annotData&, int, rawadList, int, int, double)': annotationCliqueMSR.h:476:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<double, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] if(id < allM.size()) // not add more masses in case that there are less than "n" top masses ~~~^~~~~~~~~~~~~ annotationCliqueMSR.h: In function 'std::vector<int> sortAnnotations(std::unordered_map<int, Annotation>&, int)': annotationCliqueMSR.h:725:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<double, int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] if(id < allAn.size() ) ~~~^~~~~~~~~~~~~~ annotationCliqueMSR.h: In function 'double computeMaxScore(std::vector<double>&, int, double)': annotationCliqueMSR.h:739:24: warning: 'completeroundscore' may be used uninitialized in this function [-Wmaybe-uninitialized] completeroundscore += *ritv; ~~~~~~~~~~~~~~~~~~~^~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findCliquesR.cpp -o findCliquesR.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findIsotopesR.cpp -o findIsotopesR.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o cliqueMS.dll tmp.def RcppExports.o findAnnotationR.o findCliquesR.o findIsotopesR.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/cliqueMS.buildbin-libdir/cliqueMS/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'cliqueMS' as cliqueMS_1.8.0.zip * DONE (cliqueMS) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'cliqueMS' successfully unpacked and MD5 sums checked
cliqueMS.Rcheck/tests_i386/testthat.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(cliqueMS) > > test_check("cliqueMS") adduct log10freq massdiff nummol charge 1 [M+2H-NH3]2+ -3.5129044 -15.012016600 1 2 2 [Cat]3+ -3.5129044 -0.001645737 1 3 3 [Cat]2+ -3.5129044 -0.001040400 1 2 4 [Cat+H]2+ -3.3368132 1.006178842 1 2 5 [M+2H]2+ -1.8139344 2.014552000 1 2 6 [M+H+Na]2+ -2.6999911 23.996494000 1 2 7 [M+2H+Na]3+ -3.8139344 25.003770000 1 3 8 [M+H+K]2+ -2.2341508 39.970434000 1 2 9 [M+2Na]2+ -2.6678064 45.978436000 1 2 10 [M+H+2Na]3+ -3.5129044 46.985730000 1 3 11 [M+3Na]3+ -3.5129044 68.967654000 1 3 12 [M+H]+ -0.2689987 1.007276000 1 1 13 [M+H-H2O]+ -0.7476085 -17.003277800 1 1 14 [M+Na]+ -0.9632882 22.989218000 1 1 15 [M+H-NH3]+ -1.5886251 -16.019274320 1 1 16 [M-H+2Na]+ -1.8596919 44.971164440 1 1 17 [Cat]+ -1.8948563 -0.000548579 1 1 18 [M-2H+3Na]+ -1.9108444 66.953081400 1 1 19 [M+H+H2O]+ -2.3225727 19.017868210 1 1 20 [M+K]+ -2.4159944 38.963158000 1 1 21 [M+NH4]+ -2.4917151 18.033823000 1 1 22 [M-H+2K]+ -3.1149644 76.919040000 1 1 23 [Cat+H2O]+ -3.2118744 18.010011000 1 1 24 [M+H-OH]+ -3.2118744 -15.995481930 1 1 25 [Cat-H2O]+ -3.5129044 -18.011087900 1 1 26 [Cat-H]+ -3.5129044 -1.008340400 1 1 27 [M+Na-H2O]+ -3.5129044 4.978142219 1 1 28 [M-2H+3K]+ -3.5129044 114.874881400 1 1 29 [M+K-H2O]+ -3.8139344 20.952042220 1 1 30 [M-CO2H+H]+ -4.8139344 -43.989863780 1 1 31 [3M+H-H2O]+ -4.8139344 -17.003277800 3 1 32 [2M+H]+ -1.2239848 1.007276000 2 1 33 [3M+H]+ -2.2698664 1.007276000 3 1 34 [2M+Na-H2O]+ -3.8139344 4.978142219 2 1 35 [2M+K-H2O]+ -3.8139344 20.952042220 2 1 36 [3M+K-H2O]+ -4.8139344 20.952042220 3 1 37 [2M+Na]+ -2.9688364 22.989218000 2 1 38 [2M+K]+ -3.8139344 38.963142220 2 1 39 [3M+K]+ -3.8139344 38.963142220 3 1 [1] -1.31290442 -1.31290442 -1.31290442 -1.13681316 0.38606558 -0.49999107 [7] -1.61393442 -0.03415082 -0.46780638 -1.31290442 -1.31290442 1.93100135 [13] 1.45239151 1.23671182 0.61137486 0.34030809 0.30514367 0.28915557 [19] -0.12257272 -0.21599441 -0.29171512 -0.91496441 -1.01187443 -1.01187443 [25] -1.31290442 -1.31290442 -1.31290442 -1.31290442 -1.61393442 -2.61393442 [31] -2.61393442 0.97601518 -0.06986637 -1.61393442 -1.61393442 -2.61393442 [37] -0.76883638 -1.61393442 -1.61393442 Beggining value of logl is -722.284 Aggregate cliques done, with 164 rounds Kernighan-Lin done with 2 rounds Finishing value of logl is -161.574 [ FAIL 0 | WARN 38 | SKIP 0 | PASS 14 ] [ FAIL 0 | WARN 38 | SKIP 0 | PASS 14 ] > > proc.time() user system elapsed 16.64 1.45 48.45 |
cliqueMS.Rcheck/tests_x64/testthat.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(cliqueMS) > > test_check("cliqueMS") adduct log10freq massdiff nummol charge 1 [M+2H-NH3]2+ -3.5129044 -15.012016600 1 2 2 [Cat]3+ -3.5129044 -0.001645737 1 3 3 [Cat]2+ -3.5129044 -0.001040400 1 2 4 [Cat+H]2+ -3.3368132 1.006178842 1 2 5 [M+2H]2+ -1.8139344 2.014552000 1 2 6 [M+H+Na]2+ -2.6999911 23.996494000 1 2 7 [M+2H+Na]3+ -3.8139344 25.003770000 1 3 8 [M+H+K]2+ -2.2341508 39.970434000 1 2 9 [M+2Na]2+ -2.6678064 45.978436000 1 2 10 [M+H+2Na]3+ -3.5129044 46.985730000 1 3 11 [M+3Na]3+ -3.5129044 68.967654000 1 3 12 [M+H]+ -0.2689987 1.007276000 1 1 13 [M+H-H2O]+ -0.7476085 -17.003277800 1 1 14 [M+Na]+ -0.9632882 22.989218000 1 1 15 [M+H-NH3]+ -1.5886251 -16.019274320 1 1 16 [M-H+2Na]+ -1.8596919 44.971164440 1 1 17 [Cat]+ -1.8948563 -0.000548579 1 1 18 [M-2H+3Na]+ -1.9108444 66.953081400 1 1 19 [M+H+H2O]+ -2.3225727 19.017868210 1 1 20 [M+K]+ -2.4159944 38.963158000 1 1 21 [M+NH4]+ -2.4917151 18.033823000 1 1 22 [M-H+2K]+ -3.1149644 76.919040000 1 1 23 [Cat+H2O]+ -3.2118744 18.010011000 1 1 24 [M+H-OH]+ -3.2118744 -15.995481930 1 1 25 [Cat-H2O]+ -3.5129044 -18.011087900 1 1 26 [Cat-H]+ -3.5129044 -1.008340400 1 1 27 [M+Na-H2O]+ -3.5129044 4.978142219 1 1 28 [M-2H+3K]+ -3.5129044 114.874881400 1 1 29 [M+K-H2O]+ -3.8139344 20.952042220 1 1 30 [M-CO2H+H]+ -4.8139344 -43.989863780 1 1 31 [3M+H-H2O]+ -4.8139344 -17.003277800 3 1 32 [2M+H]+ -1.2239848 1.007276000 2 1 33 [3M+H]+ -2.2698664 1.007276000 3 1 34 [2M+Na-H2O]+ -3.8139344 4.978142219 2 1 35 [2M+K-H2O]+ -3.8139344 20.952042220 2 1 36 [3M+K-H2O]+ -4.8139344 20.952042220 3 1 37 [2M+Na]+ -2.9688364 22.989218000 2 1 38 [2M+K]+ -3.8139344 38.963142220 2 1 39 [3M+K]+ -3.8139344 38.963142220 3 1 [1] -1.31290442 -1.31290442 -1.31290442 -1.13681316 0.38606558 -0.49999107 [7] -1.61393442 -0.03415082 -0.46780638 -1.31290442 -1.31290442 1.93100135 [13] 1.45239151 1.23671182 0.61137486 0.34030809 0.30514367 0.28915557 [19] -0.12257272 -0.21599441 -0.29171512 -0.91496441 -1.01187443 -1.01187443 [25] -1.31290442 -1.31290442 -1.31290442 -1.31290442 -1.61393442 -2.61393442 [31] -2.61393442 0.97601518 -0.06986637 -1.61393442 -1.61393442 -2.61393442 [37] -0.76883638 -1.61393442 -1.61393442 Beggining value of logl is -722.284 Aggregate cliques done, with 164 rounds Kernighan-Lin done with 2 rounds Finishing value of logl is -161.574 [ FAIL 0 | WARN 38 | SKIP 0 | PASS 14 ] [ FAIL 0 | WARN 38 | SKIP 0 | PASS 14 ] > > proc.time() user system elapsed 17.50 0.60 48.48 |
cliqueMS.Rcheck/examples_i386/cliqueMS-Ex.timings
|
cliqueMS.Rcheck/examples_x64/cliqueMS-Ex.timings
|