| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:22 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the compartmap package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/compartmap.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 376/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| compartmap 1.12.0 (landing page) Benjamin Johnson
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: compartmap |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/compartmap_1.12.0.tar.gz && rm -rf compartmap.buildbin-libdir && mkdir compartmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compartmap.buildbin-libdir compartmap_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL compartmap_1.12.0.zip && rm compartmap_1.12.0.tar.gz compartmap_1.12.0.zip |
| StartedAt: 2022-04-12 06:06:13 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:07:40 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 86.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/compartmap_1.12.0.tar.gz && rm -rf compartmap.buildbin-libdir && mkdir compartmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compartmap.buildbin-libdir compartmap_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL compartmap_1.12.0.zip && rm compartmap_1.12.0.tar.gz compartmap_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
28 3215k 28 920k 0 0 883k 0 0:00:03 0:00:01 0:00:02 882k
83 3215k 83 2687k 0 0 1318k 0 0:00:02 0:00:02 --:--:-- 1318k
100 3215k 100 3215k 0 0 1421k 0 0:00:02 0:00:02 --:--:-- 1421k
install for i386
* installing *source* package 'compartmap' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'compartmap'
finding HTML links ... done
agrestiCoullCI html
bootstrapCompartments html
checkAssayType html
condenseRE html
condenseSE html
dot-n_approx html
dot-p_approx html
dot-z html
estRMT html
extractOpenClosed html
fexpit html
filterCompartments html
fisherZ html
fixCompartments html
flogit html
getABSignal html
getATACABsignal html
getAssayNames html
getBinMatrix html
getChrs html
getCorMatrix html
getDenoisedMatrix html
getDomainInflections html
getGlobalMeans html
getMatrixBlocks html
getSVD html
getSeqLengths html
getShrinkageTargets html
hdf5TFIDF html
hg19.gr html
hg38.gr html
ifisherZ html
importBigWig html
k562_scatac_chr14 html
k562_scrna_chr14 html
k562_scrna_se_chr14 html
meanSmoother html
mm10.gr html
mm9.gr html
plotAB html
plotCorMatrix html
precomputeBootstrapMeans html
removeEmptyBoots html
scCompartments html
shrinkBins html
sparseToDenseMatrix html
ss3_umi_sce html
summarizeBootstraps html
transformTFIDF html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'compartmap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'compartmap' as compartmap_1.12.0.zip
* DONE (compartmap)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'compartmap' successfully unpacked and MD5 sums checked