Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:22 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the conclus package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/conclus.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 382/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
conclus 1.2.4 (landing page) Ilyess Rachedi
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: conclus |
Version: 1.2.4 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:conclus.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings conclus_1.2.4.tar.gz |
StartedAt: 2022-04-12 17:48:07 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 18:08:36 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 1228.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: conclus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:conclus.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings conclus_1.2.4.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/conclus.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'conclus/DESCRIPTION' ... OK * this is package 'conclus' version '1.2.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'conclus' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed runCONCLUS 19.48 0.28 99.75 addClustering-scRNAseq 11.44 0.64 49.70 retrieveGenesInfo-scRNAseq 9.92 0.14 60.19 normaliseCountMatrix-scRNAseq 9.28 0.05 23.13 retrieveFromGEO 8.68 0.58 9.53 testClustering-scRNAseq 1.00 0.02 16.79 clusterCellsInternal-scRNAseq 0.37 0.06 14.46 runDBSCAN-scRNAseq 0.28 0.01 14.69 generateTSNECoordinates-scRNAseq 0.20 0.00 18.99 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed runCONCLUS 20.83 0.17 93.86 addClustering-scRNAseq 9.98 0.45 28.21 retrieveFromGEO 9.98 0.19 10.17 retrieveGenesInfo-scRNAseq 9.58 0.14 21.69 normaliseCountMatrix-scRNAseq 7.31 0.06 20.86 testClustering-scRNAseq 1.00 0.04 19.94 runDBSCAN-scRNAseq 0.50 0.01 17.01 clusterCellsInternal-scRNAseq 0.33 0.03 16.45 generateTSNECoordinates-scRNAseq 0.25 0.00 22.03 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'test-all.R' OK ** running tests for arch 'x64' ... Running 'test-all.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
conclus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/conclus_1.2.4.tar.gz && rm -rf conclus.buildbin-libdir && mkdir conclus.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=conclus.buildbin-libdir conclus_1.2.4.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL conclus_1.2.4.zip && rm conclus_1.2.4.tar.gz conclus_1.2.4.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1448k 0 5187 0 0 62930 0 0:00:23 --:--:-- 0:00:23 63256 91 1448k 91 1318k 0 0 1220k 0 0:00:01 0:00:01 --:--:-- 1220k 100 1448k 100 1448k 0 0 1255k 0 0:00:01 0:00:01 --:--:-- 1255k install for i386 * installing *source* package 'conclus' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'conclus' finding HTML links ... done Dbscan-class html Tsne-class html addClustering-scRNAseq html calculateClustersSimilarity-scRNAseq html clusterCellsInternal-scRNAseq html conclusCacheClear html constructors html exportResults-scRNAseq html generateTSNECoordinates-scRNAseq html getters html loadDataOrMatrix html normaliseCountMatrix-scRNAseq html plotCellHeatmap html plotCellSimilarity-scRNAseq html plotClusteredTSNE-scRNAseq html plotClustersSimilarity html plotGeneExpression-scRNAseq html rankGenes-scRNAseq html retrieveFromGEO html retrieveGenesInfo-scRNAseq html retrieveTableClustersCells-scRNAseq html retrieveTopClustersMarkers-scRNAseq html runCONCLUS html runDBSCAN-scRNAseq html scRNAseq-class html setters html testClustering-scRNAseq html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'conclus' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'conclus' as conclus_1.2.4.zip * DONE (conclus) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'conclus' successfully unpacked and MD5 sums checked
conclus.Rcheck/tests_i386/test-all.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("conclus") Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) > test_check("conclus") Min. 1st Qu. Median Mean 3rd Qu. Max. 1 1 1 1 1 1 The following matrix shows how many times a number of clusters 'k' has been found among the dbscan solutions : 1 2 3 4 5 Number of clusters k : 1 2 3 4 5 Count : 56 10 10 4 4 Statistics about number of clusters 'k' among dbscan solutions: Min. 1st Qu. Median Mean 3rd Qu. Max. 1.00 1.00 1.00 1.69 2.00 5.00 Suggested clusters number to use in clusterCellsInternal() : clusterNumber=1.[ FAIL 0 | WARN 0 | SKIP 0 | PASS 278 ] > > proc.time() user system elapsed 59.28 1.98 144.82 |
conclus.Rcheck/tests_x64/test-all.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("conclus") Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) > test_check("conclus") Min. 1st Qu. Median Mean 3rd Qu. Max. 1 1 1 1 1 1 The following matrix shows how many times a number of clusters 'k' has been found among the dbscan solutions : 1 2 3 4 5 Number of clusters k : 1 2 3 4 5 Count : 56 10 10 4 4 Statistics about number of clusters 'k' among dbscan solutions: Min. 1st Qu. Median Mean 3rd Qu. Max. 1.00 1.00 1.00 1.69 2.00 5.00 Suggested clusters number to use in clusterCellsInternal() : clusterNumber=1.[ FAIL 0 | WARN 0 | SKIP 0 | PASS 278 ] > > proc.time() user system elapsed 50.57 1.56 145.25 |
conclus.Rcheck/examples_i386/conclus-Ex.timings
|
conclus.Rcheck/examples_x64/conclus-Ex.timings
|