Jobst Landgrebe
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/daMA |
| git_branch: RELEASE_3_14 |
| git_last_commit: 8ea2454 |
| git_last_commit_date: 2021-10-26 11:46:10 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:52 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the daMA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/daMA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 447/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| daMA 1.66.0 (landing page) Jobst Landgrebe
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: daMA |
| Version: 1.66.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:daMA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings daMA_1.66.0.tar.gz |
| StartedAt: 2022-04-12 12:12:32 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 12:13:08 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 36.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: daMA.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:daMA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings daMA_1.66.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/daMA.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘daMA/DESCRIPTION’ ... OK * this is package ‘daMA’ version ‘1.66.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘daMA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: analyseMA.Rd:70: Dropping empty section \note prepare_Rd: analyseMA.Rd:72: Dropping empty section \seealso prepare_Rd: cmat.Rd:13-14: Dropping empty section \format prepare_Rd: cmat.Rd:15-16: Dropping empty section \details prepare_Rd: cmat.Rd:17-19: Dropping empty section \source prepare_Rd: cmatB.AB.Rd:13-14: Dropping empty section \format prepare_Rd: cmatB.AB.Rd:15-16: Dropping empty section \details prepare_Rd: cmatB.AB.Rd:17-18: Dropping empty section \source prepare_Rd: core.Rd:42: Dropping empty section \keyword prepare_Rd: core.Rd:29-30: Dropping empty section \details prepare_Rd: core.Rd:31-32: Dropping empty section \value prepare_Rd: core.Rd:38: Dropping empty section \note prepare_Rd: core.Rd:40: Dropping empty section \seealso prepare_Rd: core.Rd:41: Dropping empty section \examples prepare_Rd: data.3x2.Rd:15-16: Dropping empty section \details prepare_Rd: data.3x2.Rd:21-22: Dropping empty section \references prepare_Rd: designMA.Rd:66: Dropping empty section \note prepare_Rd: designMA.Rd:68: Dropping empty section \seealso prepare_Rd: id.3x2.Rd:14-15: Dropping empty section \details prepare_Rd: id.3x2.Rd:16-17: Dropping empty section \source prepare_Rd: id.3x2.Rd:18-19: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.14-bioc/meat/daMA.Rcheck/00check.log’ for details.
daMA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL daMA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘daMA’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (daMA)
daMA.Rcheck/daMA-Ex.timings
| name | user | system | elapsed | |
| analyseMA | 0.000 | 0.001 | 0.001 | |
| cinfo | 0.021 | 0.005 | 0.027 | |
| cinfoB.AB | 0.001 | 0.002 | 0.002 | |
| cmat | 0.002 | 0.002 | 0.003 | |
| cmatB.AB | 0.002 | 0.002 | 0.003 | |
| data.3x2 | 0.072 | 0.006 | 0.079 | |
| designMA | 0.001 | 0.001 | 0.000 | |
| designs.composite | 0.002 | 0.002 | 0.003 | |
| id.3x2 | 0.003 | 0.002 | 0.003 | |