Yongchao Ge
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/flowPeaks |
| git_branch: RELEASE_3_14 |
| git_last_commit: b787a41 |
| git_last_commit_date: 2021-10-26 12:03:25 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:34 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the flowPeaks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 667/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowPeaks 1.40.0 (landing page) Yongchao Ge
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: flowPeaks |
| Version: 1.40.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/flowPeaks_1.40.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.40.0.zip && rm flowPeaks_1.40.0.tar.gz flowPeaks_1.40.0.zip |
| StartedAt: 2022-04-12 03:54:39 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 03:59:11 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 271.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/flowPeaks_1.40.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.40.0.zip && rm flowPeaks_1.40.0.tar.gz flowPeaks_1.40.0.zip
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install for i386
* installing *source* package 'flowPeaks' ...
** using staged installation
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386/Rscript.exe" "../tools/winlibs.R"
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if(levels.size()<(i+1)){
~~~~~~~~~~~~~^~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rregistrate.cpp -o Rregistrate.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)':
VoronoiDiagramGenerator.cpp:803:5: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
if(!triangulate & plot & !debug)
^~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowPeaks.cpp -o flowPeaks.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect.cpp -o func_collect.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect_supp.cpp -o func_collect_supp.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gvector_gmatrix.cpp -o gvector_gmatrix.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kd_tree.cpp -o kd_tree.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmns.cpp -o kmns.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/i386 -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/flowPeaks.buildbin-libdir/00LOCK-flowPeaks/00new/flowPeaks/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowPeaks'
finding HTML links ... done
adjust.flowPeaks html
assign.flowPeaks html
barcode html
concave html
evalCluster html
flowPeaks html
plot.flowPeaks html
print.flowPeaks html
summary.flowPeaks html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64/Rscript.exe" "../tools/winlibs.R"
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(levels.size()<(i+1)){
~~~~~~~~~~~~~^~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rregistrate.cpp -o Rregistrate.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)':
VoronoiDiagramGenerator.cpp:803:5: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
if(!triangulate & plot & !debug)
^~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowPeaks.cpp -o flowPeaks.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect.cpp -o func_collect.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect_supp.cpp -o func_collect_supp.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gvector_gmatrix.cpp -o gvector_gmatrix.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kd_tree.cpp -o kd_tree.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmns.cpp -o kmns.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.40.0.zip
* DONE (flowPeaks)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'flowPeaks' successfully unpacked and MD5 sums checked