David Rossell
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/gaga |
| git_branch: RELEASE_3_14 |
| git_last_commit: 8821347 |
| git_last_commit_date: 2021-10-26 11:51:47 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:35 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the gaga package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gaga.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 693/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gaga 2.40.0 (landing page) David Rossell
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: gaga |
| Version: 2.40.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gaga_2.40.0.tar.gz && rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gaga_2.40.0.zip && rm gaga_2.40.0.tar.gz gaga_2.40.0.zip |
| StartedAt: 2022-04-12 04:27:09 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:28:16 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 67.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gaga_2.40.0.tar.gz && rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gaga_2.40.0.zip && rm gaga_2.40.0.tar.gz gaga_2.40.0.zip
###
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install for i386
* installing *source* package 'gaga' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cseqdesma.c -o cseqdesma.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cstat.c -o cstat.o
cstat.c:22:19: warning: 'css_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$";
^~~~~~~~~~~~~
cstat.c:21:19: warning: 'vector_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char vector_c_sccs_id[] = "%W%";
^~~~~~~~~~~~~~~~
cstat.c:20:19: warning: 'nrutil_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char nrutil_c_sccs_id[] = "%W%";
^~~~~~~~~~~~~~~~
cstat.c:19:19: warning: 'mess_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char mess_c_sccs_id[] = "%W%";
^~~~~~~~~~~~~~
cstat.c:18:19: warning: 'interface_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char interface_c_sccs_id[] = "%W%";
^~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/gaga.buildbin-libdir/00LOCK-gaga/00new/gaga/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gaga'
finding HTML links ... done
buildPatterns html
checkfit html
classpred html
dcgamma html
findgenes html
fitGG html
forwsimDiffExpr html
geneclus html
getpar html
parest html
plotForwSim html
posmeansGG html
powclasspred html
powfindgenes html
print.gagaclus html
print.gagafit html
print.gagahyp html
seqBoundariesGrid html
simGG html
simnewsamples html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gaga' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cseqdesma.c -o cseqdesma.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cstat.c -o cstat.o
cstat.c:22:19: warning: 'css_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$";
^~~~~~~~~~~~~
cstat.c:21:19: warning: 'vector_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char vector_c_sccs_id[] = "%W%";
^~~~~~~~~~~~~~~~
cstat.c:20:19: warning: 'nrutil_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char nrutil_c_sccs_id[] = "%W%";
^~~~~~~~~~~~~~~~
cstat.c:19:19: warning: 'mess_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char mess_c_sccs_id[] = "%W%";
^~~~~~~~~~~~~~
cstat.c:18:19: warning: 'interface_c_sccs_id' defined but not used [-Wunused-const-variable=]
static const char interface_c_sccs_id[] = "%W%";
^~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/gaga.buildbin-libdir/gaga/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gaga' as gaga_2.40.0.zip
* DONE (gaga)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'gaga' successfully unpacked and MD5 sums checked