Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:17 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the memes package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1082/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
memes 1.2.5 (landing page) Spencer Nystrom
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: memes |
Version: 1.2.5 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:memes.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings memes_1.2.5.tar.gz |
StartedAt: 2022-04-12 15:07:48 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 15:10:55 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 187.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: memes.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:memes.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings memes_1.2.5.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/memes.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘memes/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘memes’ version ‘1.2.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘memes’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_sequence 9.871 0.302 10.216 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
memes.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL memes ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘memes’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memes)
memes.Rcheck/memes-Ex.timings
name | user | system | elapsed | |
add_sequence | 9.871 | 0.302 | 10.216 | |
ame_compare_heatmap_methods | 1.418 | 0.142 | 1.566 | |
check_meme_install | 0.807 | 0.020 | 0.830 | |
drop_best_match | 0.008 | 0.002 | 0.011 | |
example_ame | 0.099 | 0.002 | 0.101 | |
example_ame_large | 0.072 | 0.002 | 0.074 | |
force_best_match | 0.024 | 0.001 | 0.027 | |
get_sequence | 0.684 | 0.023 | 0.716 | |
has_duplicate_motifs | 0.310 | 0.009 | 0.321 | |
importAme | 0.358 | 0.033 | 0.380 | |
importDremeXML | 0.464 | 0.010 | 0.474 | |
importFimo | 0.116 | 0.009 | 0.120 | |
importMeme | 0.213 | 0.004 | 0.217 | |
importStremeXML | 0.377 | 0.006 | 0.383 | |
importTomTomXML | 0.601 | 0.007 | 0.610 | |
meme_is_installed | 0.021 | 0.001 | 0.022 | |
nest_tomtom | 0.020 | 0.001 | 0.021 | |
plot_ame_heatmap | 0.505 | 0.008 | 0.513 | |
plot_sequence_heatmap | 4.254 | 0.098 | 4.370 | |
remove_duplicate_motifs | 0.005 | 0.001 | 0.006 | |
runAme | 0.025 | 0.002 | 0.027 | |
runDreme | 0.030 | 0.002 | 0.032 | |
runFimo | 0.027 | 0.002 | 0.028 | |
runMeme | 0.029 | 0.001 | 0.031 | |
runTomTom | 0.029 | 0.001 | 0.030 | |
update_best_match | 0.180 | 0.003 | 0.184 | |
view_tomtom_hits | 1.474 | 0.008 | 1.484 | |
write_fasta | 0.003 | 0.001 | 0.004 | |