Hani Habra
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/metabCombiner |
| git_branch: RELEASE_3_14 |
| git_last_commit: a9fbf51 |
| git_last_commit_date: 2021-10-26 13:04:04 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:51 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the metabCombiner package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabCombiner.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1090/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metabCombiner 1.4.0 (landing page) Hani Habra
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: metabCombiner |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metabCombiner_1.4.0.tar.gz && rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metabCombiner_1.4.0.zip && rm metabCombiner_1.4.0.tar.gz metabCombiner_1.4.0.zip |
| StartedAt: 2022-04-12 06:52:33 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:55:11 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 158.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metabCombiner_1.4.0.tar.gz && rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metabCombiner_1.4.0.zip && rm metabCombiner_1.4.0.tar.gz metabCombiner_1.4.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 2281k 2 49737 0 0 315k 0 0:00:07 --:--:-- 0:00:07 315k
64 2281k 64 1461k 0 0 1267k 0 0:00:01 0:00:01 --:--:-- 1267k
100 2281k 100 2281k 0 0 1492k 0 0:00:01 0:00:01 --:--:-- 1491k
install for i386
* installing *source* package 'metabCombiner' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binByMZ.c -o binByMZ.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findDuplicates.c -o findDuplicates.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c labelRows.c -o labelRows.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metabCombiner_init.c -o metabCombiner_init.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c resolveRows.c -o resolveRows.o
resolveRows.c: In function 'resolveRows':
resolveRows.c:250:6: warning: variable 'sgnum' set but not used [-Wunused-but-set-variable]
int sgnum = 0;
^~~~~
resolveRows.c:249:14: warning: unused variable 'filename' [-Wunused-variable]
const char *filename = "output.txt";
^~~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c selectAnchors.c -o selectAnchors.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c write2file.c -o write2file.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metabCombiner.buildbin-libdir/00LOCK-metabCombiner/00new/metabCombiner/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'metabCombiner'
finding HTML links ... done
Qdata html
adductdata html
adjustData html
batchCombine html
calcScores html
calcScoresParam html
combinedTable html
combinerCheck html
crossValFit html
datasets html
detectFields html
evaluateParams html
featdata html
filterAnchors html
filterRT html
findDuplicates html
fit_gam html
fit_loess html
fitgamParam html
fitloessParam html
getAnchors html
getCoefficients html
getData html
getExtra html
getModel html
getSamples html
getStats html
iddata html
identityAnchorSelection html
isCombinedTable html
isMetabCombiner html
isMetabData html
iterativeAnchorSelection html
labelRows html
labelRowsParam html
metabBatches html
metabCombine html
metabCombiner-class html
metabCombiner html
metabData-class html
metabData html
mzGroup html
mzdata html
nonmatched html
objective html
plasma20 html
plasma30 html
plot_fit html
rtdata html
scorePairs html
selectAnchors html
selectAnchorsParam html
write2file html
x html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metabCombiner' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binByMZ.c -o binByMZ.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findDuplicates.c -o findDuplicates.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c labelRows.c -o labelRows.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metabCombiner_init.c -o metabCombiner_init.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c resolveRows.c -o resolveRows.o
resolveRows.c: In function 'resolveRows':
resolveRows.c:250:6: warning: variable 'sgnum' set but not used [-Wunused-but-set-variable]
int sgnum = 0;
^~~~~
resolveRows.c:249:14: warning: unused variable 'filename' [-Wunused-variable]
const char *filename = "output.txt";
^~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c selectAnchors.c -o selectAnchors.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c write2file.c -o write2file.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metabCombiner.buildbin-libdir/metabCombiner/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metabCombiner' as metabCombiner_1.4.0.zip
* DONE (metabCombiner)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'metabCombiner' successfully unpacked and MD5 sums checked