Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:21 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the miRBaseConverter package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/miRBaseConverter.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1162/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
miRBaseConverter 1.18.0 (landing page) Taosheng Xu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: miRBaseConverter |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:miRBaseConverter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings miRBaseConverter_1.18.0.tar.gz |
StartedAt: 2022-04-12 15:33:39 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 15:34:42 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 63.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: miRBaseConverter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:miRBaseConverter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings miRBaseConverter_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/miRBaseConverter.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘miRBaseConverter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘miRBaseConverter’ version ‘1.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘miRBaseConverter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
miRBaseConverter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL miRBaseConverter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘miRBaseConverter’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miRBaseConverter)
miRBaseConverter.Rcheck/tests/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("miRBaseConverter") RUNIT TEST PROTOCOL -- Tue Apr 12 15:34:34 2022 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : miRBaseConverter RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 0.561 0.090 0.625
miRBaseConverter.Rcheck/miRBaseConverter-Ex.timings
name | user | system | elapsed | |
checkMiRNAAlive | 3.784 | 0.142 | 3.928 | |
checkMiRNAFamily | 3.140 | 0.054 | 3.200 | |
checkMiRNAVersion | 0.055 | 0.016 | 0.072 | |
getAllMiRNAs | 0.221 | 0.014 | 0.236 | |
getAllSpecies | 0.000 | 0.001 | 0.000 | |
getAllVersionInfo | 0.005 | 0.003 | 0.007 | |
getMiRNAHistory | 1.453 | 0.031 | 1.485 | |
getMiRNASequence | 4.784 | 0.046 | 4.836 | |
getMiRNATable | 0.002 | 0.000 | 0.002 | |
goTo_miRBase | 3.858 | 0.029 | 3.903 | |
goTo_miRNAFamily | 1.381 | 0.018 | 1.410 | |
miRNATest | 0.001 | 0.001 | 0.003 | |
miRNAVersionConvert | 4.490 | 0.044 | 4.561 | |
miRNA_AccessionToName | 1.535 | 0.016 | 1.552 | |
miRNA_MatureToPrecursor | 0.073 | 0.033 | 0.105 | |
miRNA_NameToAccession | 3.210 | 0.047 | 3.260 | |
miRNA_PrecursorToMature | 0.111 | 0.019 | 0.131 | |