Aaron Chevalier
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/musicatk |
| git_branch: RELEASE_3_14 |
| git_last_commit: eee66e7 |
| git_last_commit_date: 2021-10-26 13:04:15 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:58 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the musicatk package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/musicatk.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1255/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| musicatk 1.4.0 (landing page) Aaron Chevalier
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: musicatk |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/musicatk_1.4.0.tar.gz && rm -rf musicatk.buildbin-libdir && mkdir musicatk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=musicatk.buildbin-libdir musicatk_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL musicatk_1.4.0.zip && rm musicatk_1.4.0.tar.gz musicatk_1.4.0.zip |
| StartedAt: 2022-04-12 07:35:05 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:38:50 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 225.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/musicatk_1.4.0.tar.gz && rm -rf musicatk.buildbin-libdir && mkdir musicatk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=musicatk.buildbin-libdir musicatk_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL musicatk_1.4.0.zip && rm musicatk_1.4.0.tar.gz musicatk_1.4.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
5 15.1M 5 879k 0 0 1241k 0 0:00:12 --:--:-- 0:00:12 1241k
20 15.1M 20 3144k 0 0 1829k 0 0:00:08 0:00:01 0:00:07 1829k
40 15.1M 40 6298k 0 0 2319k 0 0:00:06 0:00:02 0:00:04 2319k
66 15.1M 66 10.0M 0 0 2798k 0 0:00:05 0:00:03 0:00:02 2798k
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100 15.1M 100 15.1M 0 0 3256k 0 0:00:04 0:00:04 --:--:-- 3608k
install for i386
* installing *source* package 'musicatk' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'musicatk'
finding HTML links ... done
add_flank_to_variants html
finding level-2 HTML links ... done
add_variant_type html
annotate_replication_strand html
annotate_transcript_strand html
annotate_variant_length html
annotate_variant_type html
auto_predict_grid html
auto_subset_sigs html
build_custom_table html
build_standard_table html
built_tables html
cluster_exposure html
combine_count_tables html
combine_predict_grid html
compare_cosmic_v2 html
compare_cosmic_v3 html
compare_results html
cosmic_v2_sigs html
cosmic_v2_subtype_map html
cosmic_v3_dbs_sigs html
cosmic_v3_indel_sigs html
cosmic_v3_sbs_sigs html
cosmic_v3_sbs_sigs_exome html
count_table-class html
create_dbs78_table html
create_musica html
create_sbs192_table html
create_sbs96_table html
create_umap html
dbs_musica html
discover_signatures html
dot-jsd html
drop_annotation html
exposure_differential_analysis html
exposures html
extract_count_tables html
extract_variants html
extract_variants_from_maf html
extract_variants_from_maf_file html
extract_variants_from_matrix html
extract_variants_from_vcf html
extract_variants_from_vcf_file html
generate_result_grid html
get_musica html
indel_musica html
k_select html
musica-class html
musica html
musica_annot html
musica_result-class html
musica_result_grid-class html
musica_sbs96 html
musica_sbs96_tiny html
musicatk html
name_signatures html
pipe html
plot_cluster html
plot_differential_analysis html
plot_exposures html
plot_heatmap html
plot_sample_counts html
plot_sample_reconstruction_error html
plot_signatures html
plot_umap html
predict_exposure html
rc html
rep_range html
res html
res_annot html
samp_annot html
sample_names html
select_genome html
signatures html
subset_musica_by_annotation html
subset_musica_by_counts html
subset_variant_by_type html
subset_variants_by_samples html
table_96 html
table_selected html
tables html
umap html
variants html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'musicatk' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'musicatk' as musicatk_1.4.0.zip
* DONE (musicatk)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'musicatk' successfully unpacked and MD5 sums checked