Gabriel Odom
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/pathwayPCA |
| git_branch: RELEASE_3_14 |
| git_last_commit: 1a2a816 |
| git_last_commit_date: 2021-10-26 12:50:20 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:03 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the pathwayPCA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pathwayPCA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1381/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pathwayPCA 1.10.0 (landing page) Gabriel Odom
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: pathwayPCA |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pathwayPCA_1.10.0.tar.gz && rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pathwayPCA_1.10.0.zip && rm pathwayPCA_1.10.0.tar.gz pathwayPCA_1.10.0.zip |
| StartedAt: 2022-04-12 04:10:25 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:13:34 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 189.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pathwayPCA_1.10.0.tar.gz && rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pathwayPCA_1.10.0.zip && rm pathwayPCA_1.10.0.tar.gz pathwayPCA_1.10.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
27 3494k 27 976k 0 0 1005k 0 0:00:03 --:--:-- 0:00:03 1004k
59 3494k 59 2088k 0 0 1060k 0 0:00:03 0:00:01 0:00:02 1060k
100 3494k 100 3494k 0 0 1288k 0 0:00:02 0:00:02 --:--:-- 1289k
install for i386
* installing *source* package 'pathwayPCA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'pathwayPCA'
finding HTML links ... done
AESPCA_pVals html
CheckAssay html
CheckPwyColl html
CheckSampleIDs html
Contains html
ControlFDR html
CreateOmics html
CreateOmicsPathway html
CreatePathwayCollection html
ExtractAESPCs html
GumbelMixpValues html
IntersectOmicsPwyCollct html
JoinPhenoAssay html
LoadOntoPCs html
OmicsCateg-class html
OmicsPathway-class html
OmicsReg-class html
OmicsSurv-class html
OptimGumbelMixParams html
PathwaytValues html
PermTestCateg html
PermTestReg html
PermTestSurv html
SE2Tidy html
SubsetPathwayCollection html
SubsetPathwayData html
SuperPCA_pVals html
TabulatepValues html
TransposeAssay html
ValidOmicsSurv html
WhichPathways html
aespca html
colonSurv_df html
colon_pathwayCollection html
coxTrain_fun html
getPathPCLs html
getPathpVals html
get_set_OmicsPathway html
get_set_OmicsRegCateg html
get_set_OmicsSurv html
glmTrain_fun html
lars.lsa html
mysvd html
normalize html
olsTrain_fun html
pathwayPCA-package html
pathway_tControl html
pathway_tScores html
permuteSamps html
print.pathwayCollection html
read_gmt html
show-OmicsPathway-method html
superpc.st html
superpc.train html
wikipwsHS_Entrez_pathwayCollection html
wikipwsHS_Symbol_pathwayCollection html
write_gmt html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pathwayPCA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pathwayPCA' as pathwayPCA_1.10.0.zip
* DONE (pathwayPCA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'pathwayPCA' successfully unpacked and MD5 sums checked