Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:36 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the qvalue package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qvalue.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1514/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
qvalue 2.26.0 (landing page) John D. Storey
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: qvalue |
Version: 2.26.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:qvalue.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings qvalue_2.26.0.tar.gz |
StartedAt: 2022-04-12 17:15:54 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 17:16:59 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 65.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: qvalue.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:qvalue.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings qvalue_2.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/qvalue.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘qvalue/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘qvalue’ version ‘2.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘qvalue’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE lfdr: no visible global function definition for ‘qnorm’ lfdr: no visible global function definition for ‘density’ lfdr: no visible global function definition for ‘smooth.spline’ lfdr: no visible global function definition for ‘predict’ lfdr: no visible global function definition for ‘dnorm’ pi0est: no visible global function definition for ‘smooth.spline’ pi0est: no visible global function definition for ‘predict’ pi0est: no visible global function definition for ‘quantile’ plot.qvalue: no visible global function definition for ‘quantile’ write.qvalue: no visible global function definition for ‘write.table’ Undefined global functions or variables: density dnorm predict qnorm quantile smooth.spline write.table Consider adding importFrom("stats", "density", "dnorm", "predict", "qnorm", "quantile", "smooth.spline") importFrom("utils", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.14-bioc/meat/qvalue.Rcheck/00check.log’ for details.
qvalue.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qvalue ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘qvalue’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qvalue)
qvalue.Rcheck/qvalue-Ex.timings
name | user | system | elapsed | |
empPvals | 0.117 | 0.020 | 0.137 | |
hedenfalk | 1.582 | 0.059 | 1.646 | |
hist.qvalue | 0.639 | 0.022 | 0.662 | |
lfdr | 0.444 | 0.014 | 0.458 | |
pi0est | 1.394 | 0.035 | 1.432 | |
plot.qvalue | 0.710 | 0.009 | 0.719 | |
qvalue | 1.178 | 0.022 | 1.200 | |
summary.qvalue | 0.043 | 0.005 | 0.048 | |
write.qvalue | 0.067 | 0.005 | 0.073 | |