Supat Thongjuea
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/r3Cseq |
| git_branch: RELEASE_3_14 |
| git_last_commit: 4ade9b7 |
| git_last_commit_date: 2021-10-26 12:00:54 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:09 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the r3Cseq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/r3Cseq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1516/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| r3Cseq 1.40.0 (landing page) Supat Thongjuea
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: r3Cseq |
| Version: 1.40.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/r3Cseq_1.40.0.tar.gz && rm -rf r3Cseq.buildbin-libdir && mkdir r3Cseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=r3Cseq.buildbin-libdir r3Cseq_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL r3Cseq_1.40.0.zip && rm r3Cseq_1.40.0.tar.gz r3Cseq_1.40.0.zip |
| StartedAt: 2022-04-12 06:07:30 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:09:46 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 135.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/r3Cseq_1.40.0.tar.gz && rm -rf r3Cseq.buildbin-libdir && mkdir r3Cseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=r3Cseq.buildbin-libdir r3Cseq_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL r3Cseq_1.40.0.zip && rm r3Cseq_1.40.0.tar.gz r3Cseq_1.40.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
9 3405k 9 307k 0 0 683k 0 0:00:04 --:--:-- 0:00:04 682k
52 3405k 52 1782k 0 0 1229k 0 0:00:02 0:00:01 0:00:01 1229k
100 3405k 100 3405k 0 0 1581k 0 0:00:02 0:00:02 --:--:-- 1582k
install for i386
* installing *source* package 'r3Cseq' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
** help
*** installing help indices
converting help for package 'r3Cseq'
finding HTML links ... done
Myb_prom_FB html
Myb_prom_FL html
calculateBatchRPM html
calculateRPM html
contrCoverage html
contrInteractionRegions html
contrRPM html
contrRawData html
contrReadCount html
enzymeDb html
expCoverage html
expInteractionRegions html
expRPM html
expRawData html
expReadCount html
export3Cseq2bedGraph html
export3CseqRawReads2bedGraph html
exportBatchInteractions2text html
exportInteractions2text html
generate3CseqReport html
getBatchInteractions html
finding level-2 HTML links ... done
getBatchRawReads html
getBatchReadCountPerRestrictionFragment
html
getBatchReadCountPerWindow html
getContrInteractionsInRefseq html
getCoverage html
getExpInteractionsInRefseq html
getInteractions html
getRawReads html
getReadCountPerRestrictionFragment html
getReadCountPerWindow html
getViewpoint html
hg18refGene html
hg19refGene html
mm10refGene html
mm9refGene html
plot3Cecdf html
plotDomainogramNearViewpoint html
plotInteractionsNearViewpoint html
plotInteractionsPerChromosome html
plotOverviewInteractions html
r3Cseq-class html
r3CseqCommon-class html
r3CseqInBatch-class html
rn5refGene html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
** testing if installed package can be loaded from final location
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'r3Cseq' ...
** testing if installed package can be loaded
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
* MD5 sums
packaged installation of 'r3Cseq' as r3Cseq_1.40.0.zip
* DONE (r3Cseq)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'r3Cseq' successfully unpacked and MD5 sums checked