Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2022-04-13 12:07:17 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for rWikiPathways on tokay2


To the developers/maintainers of the rWikiPathways package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rWikiPathways.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1684/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rWikiPathways 1.14.0  (landing page)
Egon Willighagen
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/rWikiPathways
git_branch: RELEASE_3_14
git_last_commit: b83547a
git_last_commit_date: 2021-10-26 12:43:34 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rWikiPathways
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rWikiPathways_1.14.0.tar.gz && rm -rf rWikiPathways.buildbin-libdir && mkdir rWikiPathways.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rWikiPathways.buildbin-libdir rWikiPathways_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rWikiPathways_1.14.0.zip && rm rWikiPathways_1.14.0.tar.gz rWikiPathways_1.14.0.zip
StartedAt: 2022-04-12 06:02:45 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:06:11 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 206.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rWikiPathways_1.14.0.tar.gz && rm -rf rWikiPathways.buildbin-libdir && mkdir rWikiPathways.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rWikiPathways.buildbin-libdir rWikiPathways_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rWikiPathways_1.14.0.zip && rm rWikiPathways_1.14.0.tar.gz rWikiPathways_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  5 9509k    5  492k    0     0   619k      0  0:00:15 --:--:--  0:00:15  619k
 18 9509k   18 1742k    0     0   968k      0  0:00:09  0:00:01  0:00:08  968k
 41 9509k   41 3954k    0     0  1418k      0  0:00:06  0:00:02  0:00:04 1418k
 74 9509k   74 7059k    0     0  1856k      0  0:00:05  0:00:03  0:00:02 1856k
100 9509k  100 9509k    0     0  2143k      0  0:00:04  0:00:04 --:--:-- 2143k

install for i386

* installing *source* package 'rWikiPathways' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rWikiPathways'
    finding HTML links ... done
    downloadPathwayArchive                  html  
    findPathwayIdsByLiterature              html  
    findPathwayIdsByText                    html  
    findPathwayIdsByXref                    html  
    findPathwayNamesByLiterature            html  
    findPathwayNamesByText                  html  
    findPathwayNamesByXref                  html  
    findPathwayUrlsByLiterature             html  
    findPathwayUrlsByText                   html  
    findPathwayUrlsByXref                   html  
    findPathwaysByLiterature                html  
    findPathwaysByText                      html  
    findPathwaysByXref                      html  
    getCurationTagNames                     html  
    getCurationTags                         html  
    getEveryCurationTag                     html  
    getOntologyTermIds                      html  
    getOntologyTermNames                    html  
    getOntologyTerms                        html  
    getPathway                              html  
    getPathwayHistory                       html  
    getPathwayIdsByCurationTag              html  
    getPathwayIdsByOntologyTerm             html  
    getPathwayIdsByParentOntologyTerm       html  
    getPathwayInfo                          html  
    getPathwaysByCurationTag                html  
    getPathwaysByOntologyTerm               html  
    getPathwaysByParentOntologyTerm         html  
    getRecentChanges                        html  
    getRecentChangesIds                     html  
    getRecentChangesNames                   html  
    getXrefList                             html  
    listOrganisms                           html  
    listPathwayIds                          html  
    listPathwayNames                        html  
    listPathwayUrls                         html  
    listPathways                            html  
    readGMT                                 html  
    readGMTnames                            html  
    readPathwayGMT                          html  
    wikipathwaysAPI                         html  
    wikipathwaysGET                         html  
    writeGMT                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rWikiPathways' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rWikiPathways' as rWikiPathways_1.14.0.zip
* DONE (rWikiPathways)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'rWikiPathways' successfully unpacked and MD5 sums checked