Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:36 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the rawrr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rawrr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1530/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rawrr 1.2.0 (landing page) Christian Panse
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: rawrr |
Version: 1.2.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rawrr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rawrr_1.2.0.tar.gz |
StartedAt: 2022-04-12 17:19:04 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 17:21:07 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 122.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rawrr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rawrr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rawrr_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/rawrr.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘rawrr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rawrr’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rawrr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed readChromatogram 23.724 3.189 24.878 readSpectrum 20.700 1.983 21.835 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
rawrr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL rawrr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘rawrr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rawrr)
rawrr.Rcheck/tests/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > #R > > library(testthat) > > suppressPackageStartupMessages(library(rawrr)) > > test_check("rawrr") Total Ion Current: 78725448 Scan Low Mass: 350 Scan High Mass: 1800 Scan Start Time (Min): 0 Scan Number: 1 Base Peak Intensity: 5979308 Base Peak Mass: 445.1181 Scan Mode: FTMS + c NSI Full ms [350.0000-1800.0000] ======= Instrument data ===== : NULL Multiple Injection: ii Multi Inject Info: IT=28;28 AGC: On Micro Scan Count: 1 Scan Segment: 1 Scan Event: 1 Master Index: 0 Charge State: 0 Monoisotopic M/Z: 0.0000 Ion Injection Time (ms): 55.000 Max. Ion Time (ms): 55.00 FT Resolution: 120000 MS2 Isolation Width: 1450.00 MS2 Isolation Offset: 0.00 AGC Target: 3000000 HCD Energy: Analyzer Temperature: 27.06 === Mass Calibration: NULL Conversion Parameter B: 211820589.2896 Conversion Parameter C: -41163067.8349 Temperature Comp. (ppm): -2.35 RF Comp. (ppm): -0.09 Space Charge Comp. (ppm): -2.30 Resolution Comp. (ppm): 0.57 Number of Lock Masses: 0 Lock Mass #1 (m/z): 0.0000 Lock Mass #2 (m/z): 0.0000 Lock Mass #3 (m/z): 0.0000 LM Search Window (ppm): 0.0 LM Search Window (mmu): 0.0 Number of LM Found: 0 Last Locking (sec): 0.0 LM m/z-Correction (ppm): 0.00 === Ion Optics Settings: NULL S-Lens RF Level: 40.00 S-Lens Voltage (V): 21.00 Skimmer Voltage (V): 15.00 Inject Flatapole Offset (V): 5.00 Bent Flatapole DC (V): 2.00 MP2 and MP3 RF (V): 900.00 Gate Lens Voltage (V): 2.25 C-Trap RF (V): 2400.0 ==== Diagnostic Data: NULL Dynamic RT Shift (min): 0.00 Intens Comp Factor: 1.4281 Res. Dep. Intens: 0.981 CTCD NumF: 0 CTCD Comp: 1.009 CTCD ScScr: 0.844 RawOvFtT: 2378645.5 LC FWHM parameter: 15.0 Rod: 0 PS Inj. Time (ms): 0.640 AGC PS Mode: 1 AGC PS Diag: 3501800 HCD Energy eV: 0.000 AGC Fill: 0.76 Injection t0: -0.071 t0 FLP: 355.07 Access Id: 0 Analog Input 1 (V): 0.000 Analog Input 2 (V): 0.000 Total Ion Current: 78725448 Scan Low Mass: 350 Scan High Mass: 1800 Scan Start Time (Min): 0 Scan Number: 1 Base Peak Intensity: 5979308 Base Peak Mass: 445.1181 Scan Mode: FTMS + c NSI Full ms [350.0000-1800.0000] XIC generated from sample.raw consisting of 27 data points. Filter : ms m/z : 445.1181 Tolerance : 10 ppm RT : 0.001619751 - 0.7801059 s [ FAIL 0 | WARN 4 | SKIP 0 | PASS 164 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 164 ] > > proc.time() user system elapsed 27.227 3.995 30.932
rawrr.Rcheck/rawrr-Ex.timings
name | user | system | elapsed | |
basePeak | 0.531 | 0.187 | 0.777 | |
dependentScan | 0.582 | 0.160 | 0.673 | |
faimsVoltageOn | 0.510 | 0.134 | 0.603 | |
installRawFileReaderDLLs | 0 | 0 | 0 | |
is.rawrrChromatogram | 0.570 | 0.180 | 0.661 | |
is.rawrrSpectrum | 0.508 | 0.129 | 0.597 | |
is.rawrrSpectrumSet | 0.532 | 0.135 | 0.626 | |
makeAccessor | 0.506 | 0.131 | 0.597 | |
massRange | 0.470 | 0.130 | 0.562 | |
masterScan | 0.595 | 0.145 | 0.696 | |
plot.rawrrChromatogram | 0.574 | 0.175 | 0.659 | |
rawrrAssemblyPath | 0 | 0 | 0 | |
rawrrSpectrum | 0.026 | 0.002 | 0.027 | |
readChromatogram | 23.724 | 3.189 | 24.878 | |
readFileHeader | 0.335 | 0.080 | 0.404 | |
readIndex | 0.492 | 0.131 | 0.620 | |
readSpectrum | 20.700 | 1.983 | 21.835 | |
sampleFilePath | 0.001 | 0.000 | 0.001 | |
scanNumber | 0.494 | 0.132 | 0.591 | |
summary.rawrrChromatogram | 0.574 | 0.175 | 0.732 | |
tic | 0.505 | 0.131 | 0.604 | |
validate_rawrrIndex | 0.625 | 0.196 | 0.785 | |