Joselyn Chavez
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/regutools |
| git_branch: RELEASE_3_14 |
| git_last_commit: 3795415 |
| git_last_commit_date: 2021-10-26 12:59:29 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:12 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the regutools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/regutools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1576/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| regutools 1.6.0 (landing page) Joselyn Chavez
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: regutools |
| Version: 1.6.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings regutools_1.6.0.tar.gz |
| StartedAt: 2022-04-13 01:28:27 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 01:45:28 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 1020.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: regutools.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings regutools_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/regutools.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'regutools/DESCRIPTION' ... OK
* this is package 'regutools' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'regutools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dna_objects 12.80 0.48 13.67
build_condition 10.59 1.50 13.11
get_dna_objects 10.47 0.33 11.36
connect_database 7.99 1.68 10.05
convert_to_biostrings 8.60 1.00 14.73
get_gene_synonyms 8.94 0.40 9.69
regulondb 8.22 1.06 9.64
get_binding_sites 8.48 0.43 9.56
get_dataset 8.22 0.62 9.25
convert_to_granges 8.23 0.53 9.16
get_regulatory_network 8.29 0.30 10.17
guess_id 7.94 0.61 8.93
list_attributes 7.80 0.71 8.86
list_datasets 7.92 0.53 8.83
get_regulatory_summary 7.89 0.42 8.69
get_gene_regulators 7.66 0.36 8.53
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dna_objects 12.81 0.37 13.57
build_condition 9.22 0.40 10.28
connect_database 9.14 0.35 9.88
convert_to_biostrings 8.21 0.45 9.02
get_regulatory_summary 8.33 0.31 8.98
get_dataset 8.04 0.45 8.84
get_binding_sites 7.90 0.54 8.79
convert_to_granges 7.99 0.45 8.83
list_datasets 8.03 0.41 8.83
get_gene_synonyms 7.98 0.31 8.68
guess_id 7.86 0.36 8.59
list_attributes 7.87 0.23 8.49
regulondb 7.68 0.38 8.41
get_dna_objects 7.77 0.25 8.39
get_gene_regulators 7.58 0.39 8.34
get_regulatory_network 7.44 0.38 9.39
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
regutools.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/regutools_1.6.0.tar.gz && rm -rf regutools.buildbin-libdir && mkdir regutools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regutools.buildbin-libdir regutools_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL regutools_1.6.0.zip && rm regutools_1.6.0.tar.gz regutools_1.6.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
3 494k 3 16011 0 0 133k 0 0:00:03 --:--:-- 0:00:03 132k
100 494k 100 494k 0 0 657k 0 --:--:-- --:--:-- --:--:-- 657k
install for i386
* installing *source* package 'regutools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'regutools'
finding HTML links ... done
build_condition html
connect_database html
convert_to_biostrings html
convert_to_granges html
existing_intervals html
existing_partial_match html
get_binding_sites html
get_dataset html
get_dna_objects html
get_gene_regulators html
get_gene_synonyms html
get_regulatory_network html
get_regulatory_summary html
guess_id html
list_attributes html
list_datasets html
non_existing_intervals html
plot_dna_objects html
regulondb-class html
regulondb-methods html
regulondb html
regulondb_result-class html
regutools-package html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'regutools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'regutools' as regutools_1.6.0.zip
* DONE (regutools)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'regutools' successfully unpacked and MD5 sums checked
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regutools.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("regutools")
>
> test_check("regutools")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
149.20 9.71 166.87
|
regutools.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("regutools")
>
> test_check("regutools")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
144.64 7.12 159.26
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regutools.Rcheck/examples_i386/regutools-Ex.timings
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regutools.Rcheck/examples_x64/regutools-Ex.timings
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