Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:53 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ropls package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ropls.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1646/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ropls 1.26.4 (landing page) Etienne A. Thevenot
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ropls |
Version: 1.26.4 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ropls.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ropls_1.26.4.tar.gz |
StartedAt: 2022-04-12 09:07:47 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 09:08:42 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 54.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ropls.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ropls.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ropls_1.26.4.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/ropls.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ropls/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ropls’ version ‘1.26.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ropls’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘MultiDataSet’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getMset 5.484 0.388 5.873 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.14-bioc/meat/ropls.Rcheck/00check.log’ for details.
ropls.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ropls ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘ropls’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘opls’ with signature ‘x="MultiDataSet"’: no definition for class “MultiDataSet” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ropls)
ropls.Rcheck/ropls-Ex.timings
name | user | system | elapsed | |
checkW4M | 0.104 | 0.031 | 0.137 | |
coef | 0.473 | 0.036 | 0.509 | |
fitted | 0.901 | 0.000 | 0.901 | |
fromW4M | 0.106 | 0.000 | 0.106 | |
getEset | 0.494 | 0.000 | 0.494 | |
getLoadingMN | 0.458 | 0.000 | 0.458 | |
getMset | 5.484 | 0.388 | 5.873 | |
getPcaVarVn | 0.088 | 0.000 | 0.088 | |
getScoreMN | 0.489 | 0.006 | 0.494 | |
getSubsetVi | 0.056 | 0.001 | 0.058 | |
getSummaryDF | 0.511 | 0.000 | 0.512 | |
getVipVn | 0.503 | 0.002 | 0.504 | |
getWeightMN | 0.489 | 0.006 | 0.495 | |
opls-class | 1.965 | 0.036 | 2.001 | |
opls | 2.881 | 0.028 | 2.908 | |
oplsMultiDataSet-class | 0 | 0 | 0 | |
plot | 2.702 | 0.020 | 2.722 | |
predict | 0.045 | 0.000 | 0.045 | |
0.496 | 0.000 | 0.496 | ||
residuals | 0.313 | 0.000 | 0.312 | |
ropls-package | 1.951 | 0.004 | 1.955 | |
show | 0.492 | 0.000 | 0.492 | |
tested | 0.047 | 0.000 | 0.047 | |
toW4M | 0.101 | 0.000 | 0.102 | |
view | 0.513 | 0.012 | 0.525 | |