Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:26 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the structToolbox package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/structToolbox.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1896/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
structToolbox 1.6.1 (landing page) Gavin Rhys Lloyd
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: structToolbox |
Version: 1.6.1 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:structToolbox.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings structToolbox_1.6.1.tar.gz |
StartedAt: 2022-04-13 03:40:14 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 03:53:38 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 803.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: structToolbox.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:structToolbox.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings structToolbox_1.6.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/structToolbox.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'structToolbox/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'structToolbox' version '1.6.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'structToolbox' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fold_change_int 15.81 0.00 15.81 fold_change 10.73 0.00 10.74 fisher_exact 7.29 0.00 7.28 forward_selection_by_rank 5.47 0.05 5.52 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fold_change_int 17.89 0.02 17.91 fold_change 11.25 0.00 11.25 fisher_exact 7.74 0.00 7.73 fs_line 6.18 0.03 6.20 forward_selection_by_rank 5.99 0.09 6.08 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
structToolbox.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/structToolbox_1.6.1.tar.gz && rm -rf structToolbox.buildbin-libdir && mkdir structToolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=structToolbox.buildbin-libdir structToolbox_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL structToolbox_1.6.1.zip && rm structToolbox_1.6.1.tar.gz structToolbox_1.6.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 23 2801k 23 644k 0 0 717k 0 0:00:03 --:--:-- 0:00:03 716k 78 2801k 78 2194k 0 0 1155k 0 0:00:02 0:00:01 0:00:01 1155k 100 2801k 100 2801k 0 0 1290k 0 0:00:02 0:00:02 --:--:-- 1290k install for i386 * installing *source* package 'structToolbox' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'structToolbox' finding HTML links ... done ANOVA html AUC html DFA html DatasetExperiment_boxplot html DatasetExperiment_dist html DatasetExperiment_factor_boxplot html DatasetExperiment_heatmap html HCA html HSD html HSDEM html MTBLS79_DatasetExperiment html PCA html PLSDA html PLSR html SVM html as_data_frame html autoscale html balanced_accuracy html blank_filter html blank_filter_hist html bootstrap html calculate html chart_plot html classical_lsq html compare_dist html confounders_clsq html confounders_lsq_barchart html confounders_lsq_boxplot html constant_sum_norm html corr_coef html dfa_scores_plot html dratio_filter html feature_boxplot html feature_profile html feature_profile_array html filter_by_name html filter_na_count html filter_smeta html fisher_exact html fold_change html fold_change_int html fold_change_plot html forward_selection_by_rank html fs_line html glog_opt_plot html glog_transform html grid_search_1d html gs_line html hca_dendrogram html kfold_xval html kfoldxcv_grid html kfoldxcv_metric html knn_impute html kw_p_hist html kw_rank_sum html linear_model html log_transform html mean_centre html mean_of_medians html mixed_effect html model_apply html model_predict html model_reverse html model_train html mv_boxplot html mv_feature_filter html mv_feature_filter_hist html mv_histogram html mv_sample_filter html mv_sample_filter_hist html nroot_transform html ontology_cache html pairs_filter html pareto_scale html pca_biplot html pca_correlation_plot html pca_dstat_plot html pca_loadings_plot html pca_scores_plot html pca_scree_plot html permutation_test html permutation_test_plot html permute_sample_order html plsda_predicted_plot html plsda_regcoeff_plot html plsda_roc_plot html plsda_scores_plot html plsda_vip_plot html plsda_vip_summary_plot html plsr_cook_dist html plsr_prediction_plot html plsr_qq_plot html plsr_residual_hist html pqn_norm html pqn_norm_hist html prop_na html r_squared html rsd_filter html rsd_filter_hist html run html sb_corr html split_data html stratified_split html structToolbox html svm_plot_2d html tSNE html tSNE_scatter html tic_chart html ttest html vec_norm html wilcox_p_hist html wilcox_test html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'structToolbox' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'structToolbox' as structToolbox_1.6.1.zip * DONE (structToolbox) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'structToolbox' successfully unpacked and MD5 sums checked
structToolbox.Rcheck/tests_i386/testthat.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ggplot2) > library(structToolbox) Loading required package: struct > > test_check("structToolbox") [ FAIL 0 | WARN 2 | SKIP 0 | PASS 124 ] [ FAIL 0 | WARN 2 | SKIP 0 | PASS 124 ] > > proc.time() user system elapsed 179.18 1.85 181.07 |
structToolbox.Rcheck/tests_x64/testthat.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ggplot2) > library(structToolbox) Loading required package: struct > > test_check("structToolbox") [ FAIL 0 | WARN 2 | SKIP 0 | PASS 124 ] [ FAIL 0 | WARN 2 | SKIP 0 | PASS 124 ] > > proc.time() user system elapsed 210.68 1.00 211.65 |
structToolbox.Rcheck/examples_i386/structToolbox-Ex.timings
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structToolbox.Rcheck/examples_x64/structToolbox-Ex.timings
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