Back to Build/check report for BioC 3.14 annotations |
|
This page was generated on 2022-04-13 06:00:07 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ENCODExplorerData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 12/33 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
ENCODExplorerData 0.99.5 (landing page) Eric Fournier
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: ENCODExplorerData |
Version: 0.99.5 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ENCODExplorerData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ENCODExplorerData_0.99.5.tar.gz |
StartedAt: 2022-04-13 03:02:43 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 03:04:14 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 91.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ENCODExplorerData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ENCODExplorerData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ENCODExplorerData_0.99.5.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-data-annotation/meat/ENCODExplorerData.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ENCODExplorerData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ENCODExplorerData’ version ‘0.99.5’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ENCODExplorerData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed encode_df_full 42.551 2.024 45.366 encode_df_lite 15.961 0.676 17.080 get_schemas 2.805 0.367 6.563 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ENCODExplorerData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ENCODExplorerData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘ENCODExplorerData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ENCODExplorerData)
ENCODExplorerData.Rcheck/tests/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > #Run all tests in the ENCODExplorer package > BiocGenerics:::testPackage("ENCODExplorerData") RUNIT TEST PROTOCOL -- Wed Apr 13 03:04:12 2022 *********************************************** Number of test functions: 9 Number of errors: 0 Number of failures: 0 1 Test Suite : ENCODExplorerData RUnit Tests - 9 test functions, 0 errors, 0 failures Number of test functions: 9 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 0.451 0.032 0.465
ENCODExplorerData.Rcheck/ENCODExplorerData-Ex.timings
name | user | system | elapsed | |
build_file_db_from_raw_tables | 0 | 0 | 0 | |
clean_table | 0.140 | 0.000 | 1.871 | |
encode_df_full | 42.551 | 2.024 | 45.366 | |
encode_df_lite | 15.961 | 0.676 | 17.080 | |
fetch_and_clean_raw_ENCODE_tables | 0.071 | 0.007 | 1.514 | |
generate_encode_df_full | 0 | 0 | 0 | |
generate_encode_df_lite | 0 | 0 | 0 | |
get_encode_types | 0.022 | 0.000 | 0.298 | |
get_schema_urls | 0.030 | 0.008 | 0.096 | |
get_schemas | 2.805 | 0.367 | 6.563 | |