Chen Meng
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/mogsa |
| git_branch: master |
| git_last_commit: 31b6f9b |
| git_last_commit_date: 2021-10-26 12:19:51 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:04 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mogsa package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mogsa.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1197/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mogsa 1.29.0 (landing page) Chen Meng
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: mogsa |
| Version: 1.29.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:mogsa.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings mogsa_1.29.0.tar.gz |
| StartedAt: 2022-03-17 19:38:11 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:40:28 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 137.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: mogsa.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:mogsa.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings mogsa_1.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/mogsa.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'mogsa/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'mogsa' version '1.29.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mogsa' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
mogsa.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL mogsa
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'mogsa' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mogsa'
finding HTML links ... done
GIS html
NCI60_4array_supdata html
NCI60_4arrays html
annotate.gs html
biSoftK html
bootMbpca html
bootMbpcaK html
bootMoa html
box.gs.feature html
combine-methods html
decompose.gs.group html
decompose.gs.ind html
deflat html
distMoa html
getmgsa html
matpower html
mbpca html
mgsa-class html
moGap html
moa-class html
moa html
moa.sup-class html
moaCoef html
moaScore html
mogsa-package html
mogsa html
msvd html
nipalsSoftK html
pairwise.rv html
plot-methods html
plotGS html
prepGraphite html
prepMsigDB html
prepSupMoa html
print-methods html
processOpt html
show-methods html
softK html
summary-methods html
sup.moa html
toMoa html
wsvd html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mogsa)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'XDE' is missing or broken
done
mogsa.Rcheck/mogsa-Ex.timings
| name | user | system | elapsed | |
| GIS | 0.69 | 0.00 | 0.69 | |
| annotate.gs | 0.08 | 0.02 | 0.09 | |
| bootMbpca | 0 | 0 | 0 | |
| bootMoa | 0 | 0 | 0 | |
| box.gs.feature | 0.16 | 0.00 | 0.15 | |
| combine-methods | 0.65 | 0.00 | 0.66 | |
| decompose.gs.group | 0.10 | 0.00 | 0.09 | |
| decompose.gs.ind | 0.09 | 0.00 | 0.10 | |
| distMoa | 0.2 | 0.0 | 0.2 | |
| getmgsa | 0.07 | 0.03 | 0.09 | |
| matpower | 0 | 0 | 0 | |
| mbpca | 1.76 | 0.25 | 2.02 | |
| mgsa-class | 0.13 | 0.03 | 0.15 | |
| moGap | 1.65 | 0.06 | 1.72 | |
| moa-class | 0.11 | 0.00 | 0.11 | |
| moa | 0.67 | 0.05 | 0.72 | |
| moa.sup-class | 0.11 | 0.01 | 0.13 | |
| moaCoef | 0.77 | 0.02 | 0.78 | |
| moaScore | 0.28 | 0.03 | 0.31 | |
| mogsa-package | 0.22 | 0.03 | 0.25 | |
| mogsa | 0.30 | 0.02 | 0.31 | |
| pairwise.rv | 0.01 | 0.00 | 0.02 | |
| plotGS | 0.14 | 0.00 | 0.14 | |
| prepGraphite | 0.32 | 0.00 | 0.31 | |
| prepMsigDB | 0.01 | 0.00 | 0.02 | |
| prepSupMoa | 3.14 | 0.12 | 3.26 | |
| softK | 0 | 0 | 0 | |
| sup.moa | 0.22 | 0.03 | 0.25 | |
| wsvd | 0 | 0 | 0 | |