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This page was generated on 2022-10-18 14:50:13 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MSstatsBioData on nebbiolo1


To the developers/maintainers of the MSstatsBioData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 248/410HostnameOS / ArchINSTALLBUILDCHECK
MSstatsBioData 1.18.0  (landing page)
Meena Choi
Snapshot Date: 2022-10-18 07:30:03 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/MSstatsBioData
git_branch: RELEASE_3_15
git_last_commit: fc01cf8
git_last_commit_date: 2022-04-26 13:28:40 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped

Summary

Package: MSstatsBioData
Version: 1.18.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsBioData
StartedAt: 2022-10-18 10:32:48 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 10:32:54 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 6.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsBioData
###
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* checking for file ‘MSstatsBioData/DESCRIPTION’ ... OK
* preparing ‘MSstatsBioData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MSstatsBioData.Rmd’ using knitr
Loading required package: MSstatsBioData
Warning: Package 'MSstatsBioData' is deprecated and will be removed from Bioconductor version 3.16
Loading required package: MSstats

Attaching package: 'MSstats'

The following object is masked from 'package:grDevices':

    savePlot

Quitting from lines 83-91 (MSstatsBioData.Rmd) 
Error: processing vignette 'MSstatsBioData.Rmd' failed with diagnostics:
unused argument (cutoffCensored = "minFeature")
--- failed re-building ‘MSstatsBioData.Rmd’

SUMMARY: processing the following file failed:
  ‘MSstatsBioData.Rmd’

Error: Vignette re-building failed.
Execution halted