Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:54 -0500 (Thu, 17 Feb 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SCATEData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 336/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
SCATEData 1.5.1 (landing page) Wenpin Hou
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: SCATEData |
Version: 1.5.1 |
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings SCATEData_1.5.1.tar.gz |
StartedAt: 2022-02-17 07:56:53 -0500 (Thu, 17 Feb 2022) |
EndedAt: 2022-02-17 08:02:22 -0500 (Thu, 17 Feb 2022) |
EllapsedTime: 328.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SCATEData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings SCATEData_1.5.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/SCATEData.Rcheck’ * using R Under development (unstable) (2022-01-05 r81451) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SCATEData/DESCRIPTION’ ... OK * this is package ‘SCATEData’ version ‘1.5.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SCATEData’ can be installed ... OK * checking installed package size ... NOTE installed size is 336.2Mb sub-directories of 1Mb or more: extdata 336.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: hg19.rds.Rd:18-19: Dropping empty section \usage prepare_Rd: mm10.rds.Rd:18-19: Dropping empty section \usage * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed hg19.rds 6.964 0.424 7.389 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/SCATEData.Rcheck/00check.log’ for details.
SCATEData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL SCATEData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘SCATEData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-02-15 ** testing if installed package can be loaded from final location snapshotDate(): 2022-02-15 ** testing if installed package keeps a record of temporary installation path * DONE (SCATEData)
SCATEData.Rcheck/SCATEData-Ex.timings
name | user | system | elapsed | |
GSM1596831.bam | 0.077 | 0.004 | 0.082 | |
GSM1596840.bam | 0.091 | 0.000 | 0.092 | |
GSM1596874.bam | 0.052 | 0.004 | 0.056 | |
GSM1596881.bam | 0.057 | 0.000 | 0.058 | |
GSM1596940.bam | 0.021 | 0.000 | 0.021 | |
GSM1596942.bam | 0.055 | 0.000 | 0.056 | |
GSM1596944.bam | 1.004 | 0.028 | 1.033 | |
GSM1596961.bam | 0.104 | 0.000 | 0.105 | |
GSM1597041.bam | 0.081 | 0.000 | 0.081 | |
GSM1597096.bam | 0.079 | 0.012 | 0.091 | |
SRR1779746.bam | 0.124 | 0.016 | 0.140 | |
SRR1779805.bam | 0.147 | 0.008 | 0.155 | |
SRR1779856.bam | 0.023 | 0.000 | 0.024 | |
SRR1779874.bam | 0.206 | 0.008 | 0.214 | |
SRR1779956.bam | 0.137 | 0.000 | 0.137 | |
SRR1779959.bam | 0.141 | 0.016 | 0.157 | |
SRR1779973.bam | 0.085 | 0.012 | 0.096 | |
SRR1780018.bam | 0.046 | 0.004 | 0.051 | |
SRR1780020.bam | 0.081 | 0.004 | 0.085 | |
SRR1780054.bam | 0.176 | 0.012 | 0.188 | |
hg19.rds | 6.964 | 0.424 | 7.389 | |
mm10.rds | 3.203 | 0.344 | 3.548 | |