Back to Build/check report for BioC 3.15 experimental data
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This page was generated on 2022-10-18 14:50:12 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for ewceData on nebbiolo1


To the developers/maintainers of the ewceData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 115/410HostnameOS / ArchINSTALLBUILDCHECK
ewceData 1.4.0  (landing page)
Alan Murphy
Snapshot Date: 2022-10-18 07:30:03 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/ewceData
git_branch: RELEASE_3_15
git_last_commit: 3b9f1a5
git_last_commit_date: 2022-04-26 13:35:31 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ewceData
Version: 1.4.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings ewceData_1.4.0.tar.gz
StartedAt: 2022-10-18 11:20:33 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 11:22:14 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 100.9 seconds
RetCode: 0
Status:   OK  
CheckDir: ewceData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings ewceData_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/ewceData.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ewceData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL ewceData
###
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* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘ewceData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ewceData)

Tests output


Example timings

ewceData.Rcheck/ewceData-Ex.timings

nameusersystemelapsed
all_hgnc2.0560.2573.339
all_hgnc_wtEnsembl0.6410.1000.926
all_mgi0.7180.0680.976
all_mgi_wtEnsembl0.7600.1961.144
alzh_gwas_top1000.0000.0010.001
cortex_mrna2.3360.5463.076
ctd2.6540.1382.974
ensembl_transcript_lengths_GCcontent0.9090.0481.158
ewceData-Package0.5820.0430.721
example_genelist0.6520.0360.876
hpsd_genes0.9650.0801.233
hypothalamus_mrna0.8170.0761.103
id_genes0.6340.0360.887
mgi_synonym_data0.9100.0481.155
mouse_to_human_homologs0.6130.0600.970
rbfox_genes0.6380.0560.840
schiz_genes0.6180.0280.852
tt_alzh0.9310.7721.930
tt_alzh_BA360.7300.0720.997
tt_alzh_BA440.6560.0560.899