Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the nullrangesData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 258/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
nullrangesData 1.1.0 (landing page) Michael Love
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: nullrangesData |
Version: 1.1.0 |
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:nullrangesData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings nullrangesData_1.1.0.tar.gz |
StartedAt: 2022-02-17 07:42:33 -0500 (Thu, 17 Feb 2022) |
EndedAt: 2022-02-17 07:46:51 -0500 (Thu, 17 Feb 2022) |
EllapsedTime: 257.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: nullrangesData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:nullrangesData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings nullrangesData_1.1.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/nullrangesData.Rcheck’ * using R Under development (unstable) (2022-01-05 r81451) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘nullrangesData/DESCRIPTION’ ... OK * this is package ‘nullrangesData’ version ‘1.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nullrangesData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Error: package or namespace load failed for ‘nullrangesData’: .onLoad failed in loadNamespace() for 'nullrangesData', details: call: readRDS(.db_index_file(x)) error: error reading from connection Call sequence: 6: stop(msg, call. = FALSE, domain = NA) 5: value[[3L]](cond) 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 3: tryCatchList(expr, classes, parentenv, handlers) 2: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only) }, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA) }) 1: library(packa Execution halted * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/nullrangesData.Rcheck/00check.log’ for details.
nullrangesData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL nullrangesData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘nullrangesData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-02-15 ** testing if installed package can be loaded from final location snapshotDate(): 2022-02-15 ** testing if installed package keeps a record of temporary installation path * DONE (nullrangesData)
nullrangesData.Rcheck/nullrangesData-Ex.timings
name | user | system | elapsed | |
DHSA549Hg38 | 1.920 | 0.196 | 2.248 | |
hg19_10kb_bins | 2.680 | 0.324 | 3.088 | |
hg19_10kb_ctcfBoundBinPairs | 1.177 | 0.116 | 1.387 | |
nullrangesData | 1.266 | 0.196 | 1.546 | |