Back to Workflows build report for BioC 3.15

This page was generated on 2022-10-18 14:00:09 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for annotation on nebbiolo1


To the developers/maintainers of the annotation package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1/29HostnameOS / ArchINSTALLBUILD
annotation 1.20.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-10-18 07:45:02 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/annotation
git_branch: RELEASE_3_15
git_last_commit: ee5d921
git_last_commit_date: 2022-04-26 12:40:14 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK  

Summary

Package: annotation
Version: 1.20.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data annotation
StartedAt: 2022-10-18 08:02:13 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 08:07:53 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 340.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data annotation
###
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* checking for file ‘annotation/DESCRIPTION’ ... OK
* preparing ‘annotation’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Annotating_Genomic_Ranges.Rmd’ using rmarkdown
--- finished re-building ‘Annotating_Genomic_Ranges.Rmd’

--- re-building ‘Annotation_Resources.Rmd’ using rmarkdown
Quitting from lines 764-767 (Annotation_Resources.Rmd) 
Error: processing vignette 'Annotation_Resources.Rmd' failed with diagnostics:
Gateway Timeout (HTTP 504).
--- failed re-building ‘Annotation_Resources.Rmd’

SUMMARY: processing the following file failed:
  ‘Annotation_Resources.Rmd’

Error: Vignette re-building failed.
Execution halted