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This page was generated on 2023-10-16 11:36:14 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 964/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iBMQ 1.40.0  (landing page)
Greg Imholte
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/iBMQ
git_branch: RELEASE_3_17
git_last_commit: 8375e68
git_last_commit_date: 2023-04-25 10:25:06 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64... NOT SUPPORTED ...
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

INSTALL results for iBMQ on palomino3


To the developers/maintainers of the iBMQ package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iBMQ.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: iBMQ
Version: 1.40.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL iBMQ
StartedAt: 2023-10-15 16:00:42 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 16:00:57 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 15.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL iBMQ
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'iBMQ' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ARS.c -o ARS.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RngStream.c -o RngStream.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c iBMQ_common.c -o iBMQ_common.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:255:33: warning: 'Cfile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:59: note: 'Cfile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                                                           ^~~~~
main_parallel_sparse.c:255:33: warning: 'Sig2file' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:48: note: 'Sig2file' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                                                ^~~~~~~~
main_parallel_sparse.c:255:33: warning: 'Mufile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:39: note: 'Mufile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                                       ^~~~~~
main_parallel_sparse.c:255:33: warning: 'Bfile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:31: note: 'Bfile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                               ^~~~~
main_parallel_sparse.c:255:33: warning: 'Afile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:23: note: 'Afile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                       ^~~~~
main_parallel_sparse.c:255:33: warning: 'Pfile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:15: note: 'Pfile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |               ^~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c norm_gamma_generation.c -o norm_gamma_generation.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sparse.c -o sparse.o
gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/x64/lib -lgsl -lgslcblas -lm -fopenmp -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-iBMQ/00new/iBMQ/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iBMQ)