Thomas N. Lawson
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/msPurity |
| git_branch: RELEASE_3_17 |
| git_last_commit: 0e3ee56 |
| git_last_commit_date: 2023-04-25 10:47:11 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:37:17 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1311/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| msPurity 1.26.0 (landing page) Thomas N. Lawson
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the msPurity package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/msPurity.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: msPurity |
| Version: 1.26.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity |
| StartedAt: 2023-10-15 19:43:23 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 20:04:58 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 1295.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity ### ############################################################################## ############################################################################## * checking for file ‘msPurity/DESCRIPTION’ ... OK * preparing ‘msPurity’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ using rmarkdown Sizes of mz and intensity arrays don't match. Quitting from lines 92-94 [unnamed-chunk-3] (msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd) Error: processing vignette 'msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd' failed with diagnostics: dims [product 4516] do not match the length of object [2258] --- failed re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ --- re-building ‘msPurity-spectral-database-vignette.Rmd’ using rmarkdown --- finished re-building ‘msPurity-spectral-database-vignette.Rmd’ --- re-building ‘msPurity-vignette.Rmd’ using rmarkdown --- finished re-building ‘msPurity-vignette.Rmd’ SUMMARY: processing the following file failed: ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ Error: Vignette re-building failed. Execution halted