Weil Lai
| Snapshot Date: 2022-11-08 13:55:08 -0500 (Tue, 08 Nov 2022) |
| git_url: https://git.bioconductor.org/packages/sigPathway |
| git_branch: master |
| git_last_commit: 24fc731 |
| git_last_commit_date: 2022-11-01 10:41:36 -0500 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.17 |
|
This page was generated on 2022-11-09 13:21:15 -0500 (Wed, 09 Nov 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2022-10-25 r83175) -- "Unsuffered Consequences" | 4449 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 3992 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the sigPathway package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sigPathway.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1847/2151 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sigPathway 1.67.0 (landing page) Weil Lai
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: sigPathway |
| Version: 1.67.0 |
| Command: rm -rf sigPathway.buildbin-libdir && mkdir sigPathway.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sigPathway_1.67.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R sigPathway.buildbin-libdir |
| StartedAt: 2022-11-09 09:37:01 -0500 (Wed, 09 Nov 2022) |
| EndedAt: 2022-11-09 09:37:13 -0500 (Wed, 09 Nov 2022) |
| EllapsedTime: 12.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: sigPathway_1.67.0.tgz |
| PackageFileSize: 779 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf sigPathway.buildbin-libdir && mkdir sigPathway.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sigPathway_1.67.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R sigPathway.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=sigPathway.buildbin-libdir sigPathway_1.67.0.tar.gz' >>>>>>> * installing *source* package ‘sigPathway’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c calc_gene_set_internal.c -o calc_gene_set_internal.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c calc_gene_set_stat.c -o calc_gene_set_stat.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c calc_probe_stat.c -o calc_probe_stat.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c calc_weights.c -o calc_weights.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c matrix_fn.c -o matrix_fn.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c permute.c -o permute.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c shuffle.c -o shuffle.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c sigPathway.c -o sigPathway.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sigPathway.so calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.17-bioc/meat/sigPathway.buildbin-libdir/00LOCK-sigPathway/00new/sigPathway/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sigPathway) >>>>>>> >>>>>>> FIXING LINKS FOR sigPathway.buildbin-libdir/sigPathway/libs/sigPathway.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "sigPathway.buildbin-libdir/sigPathway/libs/sigPathway.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "sigPathway.buildbin-libdir/sigPathway/libs/sigPathway.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "sigPathway.buildbin-libdir/sigPathway/libs/sigPathway.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "sigPathway.buildbin-libdir/sigPathway/libs/sigPathway.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "sigPathway.buildbin-libdir/sigPathway/libs/sigPathway.so"