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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CancerInSilico
###
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* checking for file ‘CancerInSilico/DESCRIPTION’ ... OK
* preparing ‘CancerInSilico’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘CancerInSilico’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RunModel.cpp -o RunModel.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Tests/Core/test-CellType.cpp -o Tests/Core/test-CellType.o
Tests/Core/test-CellType.cpp:18:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type0.name() == "DEFAULT");
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:19:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type0.id() == 0);
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:20:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type0.size() == 1.0);
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:21:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type0.minCycle() == 48);
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:22:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type0.cycleLength() == 48);
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:28:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type1.name() == "DOUBLE_SIZE");
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:29:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type1.id() == 1);
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:30:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type1.size() == 2.0);
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:31:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type1.minCycle() == 48);
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
Tests/Core/test-CellType.cpp:32:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
REQUIRE(type1.cycleLength() == 48);
^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr )
^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
INTERNAL_CATCH_REACT( __catchResult ) \
^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
#define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
#define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
^
<inline asm>:1:2: note: instantiated into assembly here
int $3
^
10 errors generated.
make: *** [Tests/Core/test-CellType.o] Error 1
ERROR: compilation failed for package ‘CancerInSilico’
* removing ‘/private/tmp/RtmpTtNQ8g/Rinstf2a520276816/CancerInSilico’
-----------------------------------
ERROR: package installation failed