Mikhail Dozmorov
| Snapshot Date: 2023-10-11 05:00:01 -0400 (Wed, 11 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/CTCF |
| git_branch: RELEASE_3_17 |
| git_last_commit: ecc98d9 |
| git_last_commit_date: 2022-12-24 18:53:51 -0400 (Sat, 24 Dec 2022) |
| Back to Build/check report for BioC 3.17 annotations |
|
This page was generated on 2023-10-11 08:30:04 -0400 (Wed, 11 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 12/37 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| CTCF 0.99.11 (landing page) Mikhail Dozmorov
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | |||||||
|
To the developers/maintainers of the CTCF package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CTCF |
| Version: 0.99.11 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:CTCF.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings CTCF_0.99.11.tar.gz |
| StartedAt: 2023-10-11 05:32:59 -0400 (Wed, 11 Oct 2023) |
| EndedAt: 2023-10-11 05:34:05 -0400 (Wed, 11 Oct 2023) |
| EllapsedTime: 65.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CTCF.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:CTCF.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings CTCF_0.99.11.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-annotation/meat/CTCF.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘CTCF/DESCRIPTION’ ... OK
* this is package ‘CTCF’ version ‘0.99.11’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CTCF’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘CTCF.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
CTCF.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL CTCF ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘CTCF’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CTCF)