| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:24 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ELMER package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELMER.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 616/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ELMER 2.23.0 (landing page) Tiago Chedraoui Silva
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
| Package: ELMER |
| Version: 2.23.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ELMER |
| StartedAt: 2023-04-11 16:25:26 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 16:31:20 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 353.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ELMER ### ############################################################################## ############################################################################## * checking for file ‘ELMER/DESCRIPTION’ ... OK * preparing ‘ELMER’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘analysis_data_input.Rmd’ using rmarkdown --- finished re-building ‘analysis_data_input.Rmd’ --- re-building ‘analysis_diff_meth.Rmd’ using rmarkdown --- finished re-building ‘analysis_diff_meth.Rmd’ --- re-building ‘analysis_get_pair.Rmd’ using rmarkdown --- finished re-building ‘analysis_get_pair.Rmd’ --- re-building ‘analysis_gui.Rmd’ using rmarkdown --- finished re-building ‘analysis_gui.Rmd’ --- re-building ‘analysis_motif_enrichment.Rmd’ using rmarkdown --- finished re-building ‘analysis_motif_enrichment.Rmd’ --- re-building ‘analysis_regulatory_tf.Rmd’ using rmarkdown Quitting from lines 93-103 (analysis_regulatory_tf.Rmd) Quitting from lines 93-103 (analysis_regulatory_tf.Rmd) Error: processing vignette 'analysis_regulatory_tf.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘analysis_regulatory_tf.Rmd’ --- re-building ‘index.Rmd’ using rmarkdown --- finished re-building ‘index.Rmd’ --- re-building ‘input.Rmd’ using rmarkdown --- finished re-building ‘input.Rmd’ --- re-building ‘pipe.Rmd’ using rmarkdown --- finished re-building ‘pipe.Rmd’ --- re-building ‘plots_TF.Rmd’ using rmarkdown Quitting from lines 41-46 (plots_TF.Rmd) Error: processing vignette 'plots_TF.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘plots_TF.Rmd’ --- re-building ‘plots_heatmap.Rmd’ using rmarkdown --- finished re-building ‘plots_heatmap.Rmd’ --- re-building ‘plots_motif_enrichment.Rmd’ using rmarkdown --- finished re-building ‘plots_motif_enrichment.Rmd’ --- re-building ‘plots_scatter.Rmd’ using rmarkdown --- finished re-building ‘plots_scatter.Rmd’ --- re-building ‘plots_schematic.Rmd’ using rmarkdown --- finished re-building ‘plots_schematic.Rmd’ --- re-building ‘usecase.Rmd’ using rmarkdown --- finished re-building ‘usecase.Rmd’ SUMMARY: processing the following files failed: ‘analysis_regulatory_tf.Rmd’ ‘plots_TF.Rmd’ Error: Vignette re-building failed. Execution halted