| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:36 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ExperimentHub package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ExperimentHub.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 662/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ExperimentHub 2.7.1 (landing page) Bioconductor Package Maintainer
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
| Package: ExperimentHub |
| Version: 2.7.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings ExperimentHub_2.7.1.tar.gz |
| StartedAt: 2023-04-12 06:11:25 -0400 (Wed, 12 Apr 2023) |
| EndedAt: 2023-04-12 06:20:28 -0400 (Wed, 12 Apr 2023) |
| EllapsedTime: 542.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ExperimentHub.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings ExperimentHub_2.7.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/ExperimentHub.Rcheck’
* using R Under development (unstable) (2023-02-14 r83833)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* checking for file ‘ExperimentHub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ExperimentHub’ version ‘2.7.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ExperimentHub’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) ExperimentHub-class.Rd:70-83: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:92-95: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:104-108: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:109-115: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:116-120: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:121-126: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:127-161: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:169-173: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:174-178: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:179-185: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:186-207: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:208-216: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:217-221: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:222-226: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:233-237: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:238-242: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:243-254: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:255-258: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:259-262: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:263-270: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:271-278: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:279-284: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:291-295: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:296-300: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘ExperimentHub.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/home/biocbuild/bbs-3.17-bioc/meat/ExperimentHub.Rcheck/00check.log’
for details.
ExperimentHub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ExperimentHub ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘ExperimentHub’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExperimentHub)
ExperimentHub.Rcheck/ExperimentHub-Ex.timings
| name | user | system | elapsed | |
| ExperimentHub-class | 2.197 | 0.120 | 2.686 | |
| getExperimentHubOption | 0 | 0 | 0 | |
| listResources | 0 | 0 | 0 | |