Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:26 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the interacCircos package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/interacCircos.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 996/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
interacCircos 1.9.0 (landing page) Zhe Cui
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
Package: interacCircos |
Version: 1.9.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:interacCircos.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings interacCircos_1.9.0.tar.gz |
StartedAt: 2023-04-11 21:02:35 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 21:03:07 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 31.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: interacCircos.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:interacCircos.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings interacCircos_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/interacCircos.Rcheck’ * using R version 4.3.0 alpha (2023-04-03 r84154) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.2 LTS * using session charset: UTF-8 * checking for file ‘interacCircos/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘interacCircos’ version ‘1.9.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘interacCircos’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘interacCircos.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
interacCircos.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL interacCircos ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘interacCircos’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (interacCircos)
interacCircos.Rcheck/interacCircos-Ex.timings
name | user | system | elapsed | |
Circos | 0.221 | 0.004 | 0.230 | |
CircosArc | 0.067 | 0.016 | 0.083 | |
CircosAuxLine | 0.058 | 0.008 | 0.066 | |
CircosBackground | 0.059 | 0.012 | 0.071 | |
CircosBubble | 0.316 | 0.000 | 0.316 | |
CircosChord | 0.069 | 0.004 | 0.073 | |
CircosChord.p | 0.058 | 0.004 | 0.062 | |
CircosCnv | 0.189 | 0.008 | 0.197 | |
CircosGene | 0.062 | 0.012 | 0.074 | |
CircosHeatmap | 0.316 | 0.020 | 0.336 | |
CircosHistogram | 0.134 | 0.012 | 0.146 | |
CircosLegend | 0.058 | 0.012 | 0.070 | |
CircosLine | 0.303 | 0.000 | 0.304 | |
CircosLink | 0.066 | 0.016 | 0.082 | |
CircosLollipop | 0.175 | 0.008 | 0.183 | |
CircosScatter | 0.939 | 0.000 | 0.939 | |
CircosSnp | 0.468 | 0.008 | 0.476 | |
CircosText | 0.072 | 0.012 | 0.084 | |
CircosWig | 1.021 | 0.008 | 1.029 | |