| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:38 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the lfa package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/lfa.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1054/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| lfa 1.29.0 (landing page) Wei Hao
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | ERROR | ERROR | skipped | ||||||||||
| Package: lfa |
| Version: 1.29.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data lfa |
| StartedAt: 2023-04-12 03:10:30 -0400 (Wed, 12 Apr 2023) |
| EndedAt: 2023-04-12 03:10:31 -0400 (Wed, 12 Apr 2023) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data lfa
###
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* checking for file ‘lfa/DESCRIPTION’ ... OK
* preparing ‘lfa’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘lfa’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fastmat.c -o fastmat.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/include/R.h:78,
from lfa.h:4,
from fastmat.c:1:
fastmat.c: In function ‘mv’:
fastmat.c:22:14: error: too few arguments to function ‘dgemv_’
22 | F77_CALL(dgemv)(&tr,dimA,dimA+1,&alpha,A,dimA,v,&one,&zero,ret,&one);
| ^~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:107:10: note: declared here
107 | F77_NAME(dgemv)(const char *trans, const int *m, const int *n,
| ^~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:107:1: note: in expansion of macro ‘F77_NAME’
107 | F77_NAME(dgemv)(const char *trans, const int *m, const int *n,
| ^~~~~~~~
fastmat.c: In function ‘tmv’:
fastmat.c:48:14: error: too few arguments to function ‘dgemv_’
48 | F77_CALL(dgemv)(&tr,dimA,dimA+1,&alpha,A,dimA,v,&one,&zero,ret,&one);
| ^~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:107:10: note: declared here
107 | F77_NAME(dgemv)(const char *trans, const int *m, const int *n,
| ^~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:107:1: note: in expansion of macro ‘F77_NAME’
107 | F77_NAME(dgemv)(const char *trans, const int *m, const int *n,
| ^~~~~~~~
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: fastmat.o] Error 1
ERROR: compilation failed for package ‘lfa’
* removing ‘/tmp/Rtmpc0tWtp/Rinst3e3ae05eca7215/lfa’
-----------------------------------
ERROR: package installation failed