| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:40 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the rGREAT package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rGREAT.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1688/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rGREAT 2.1.10 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | ERROR | OK | ERROR | ||||||||||
| Package: rGREAT |
| Version: 2.1.10 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:rGREAT.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings rGREAT_2.1.10.tar.gz |
| StartedAt: 2023-04-12 08:49:45 -0400 (Wed, 12 Apr 2023) |
| EndedAt: 2023-04-12 08:49:51 -0400 (Wed, 12 Apr 2023) |
| EllapsedTime: 6.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: rGREAT.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:rGREAT.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings rGREAT_2.1.10.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/rGREAT.Rcheck’
* using R Under development (unstable) (2023-02-14 r83833)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* checking for file ‘rGREAT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rGREAT’ version ‘2.1.10’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'BioMartGOGeneSets', 'UniProtKeywords'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rGREAT’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.17-bioc/meat/rGREAT.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/rGREAT.Rcheck/00check.log’
for details.
rGREAT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL rGREAT ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘rGREAT’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0’ g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o rGREAT.so RcppExports.o reduce_by_start_and_end.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR RcppExports.o: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make: *** [/home/biocbuild/bbs-3.17-bioc/R/share/make/shlib.mk:10: rGREAT.so] Error 1 ERROR: compilation failed for package ‘rGREAT’ * removing ‘/home/biocbuild/bbs-3.17-bioc/R/site-library/rGREAT’ * restoring previous ‘/home/biocbuild/bbs-3.17-bioc/R/site-library/rGREAT’