| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-10-24 11:41:36 -0400 (Tue, 24 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4724 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4459 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4473 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4461 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2073/2264 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SummarizedBenchmark 2.19.0 (landing page) Patrick Kimes
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.3.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
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To the developers/maintainers of the SummarizedBenchmark package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SummarizedBenchmark.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SummarizedBenchmark |
| Version: 2.19.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:SummarizedBenchmark.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --timings SummarizedBenchmark_2.19.0.tar.gz |
| StartedAt: 2023-10-24 13:52:57 -0000 (Tue, 24 Oct 2023) |
| EndedAt: 2023-10-24 13:53:12 -0000 (Tue, 24 Oct 2023) |
| EllapsedTime: 15.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: SummarizedBenchmark.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:SummarizedBenchmark.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --timings SummarizedBenchmark_2.19.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/SummarizedBenchmark.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SummarizedBenchmark’ version ‘2.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘IHW’
Depends: includes the non-default packages:
'tidyr', 'SummarizedExperiment', 'S4Vectors', 'BiocGenerics',
'UpSetR', 'rlang', 'stringr', 'BiocParallel', 'ggplot2', 'mclust',
'dplyr', 'digest', 'sessioninfo', 'crayon', 'tibble'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.18-bioc/meat/SummarizedBenchmark.Rcheck/00check.log’
for details.