Back to Long Tests report for BioC 3.18

This page was generated on 2024-03-02 23:55:02 -0500 (Sat, 02 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/30HostnameOS / ArchCHECK
biodbLipidmaps 1.8.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-03-02 09:55:02 -0500 (Sat, 02 Mar 2024)
git_url: https://git.bioconductor.org/packages/biodbLipidmaps
git_branch: RELEASE_3_18
git_last_commit: f02eedd
git_last_commit_date: 2023-10-24 11:38:15 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino4Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbLipidmaps on lconway


To the developers/maintainers of the biodbLipidmaps package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbLipidmaps
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.8.0.tar.gz
StartedAt: 2024-03-02 15:00:50 -0500 (Sat, 02 Mar 2024)
EndedAt: 2024-03-02 15:05:46 -0500 (Sat, 02 Mar 2024)
EllapsedTime: 296.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbLipidmaps.Rcheck
Warnings: 0

Tests output

biodbLipidmaps.Rcheck/tests/testthat.Rout


R version 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbLipidmaps)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbLipidmaps")
biodb.INFO [2024-03-02 15:01:29.212][biodb::testContext]
biodb.INFO [2024-03-02 15:01:29.216][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:01:29.217][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-03-02 15:01:29.218][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:01:29.219][biodb::testContext]
biodb.INFO [2024-03-02 15:01:29.225][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:01:29.228][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 15:01:29.235][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:29.236][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 15:01:29.237][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 15:01:29.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.241][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 15:01:29.258][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 15:01:29.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.261][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 15:01:29.262][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 15:01:29.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.266][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 15:01:29.267][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 15:01:29.268][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 15:01:29.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.271][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 15:01:29.272][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 15:01:29.273][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 15:01:29.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.276][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 15:01:29.277][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 15:01:29.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.281][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 15:01:29.282][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 15:01:29.283][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 15:01:29.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.286][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 15:01:29.287][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 15:01:29.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.290][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 15:01:29.291][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 15:01:29.292][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 15:01:29.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.296][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:01:29.297][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 15:01:29.297][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 15:01:29.298][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 15:01:29.299][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 15:01:29.300][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 15:01:29.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.304][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 15:01:29.305][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 15:01:29.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.308][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 15:01:29.309][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 15:01:29.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.312][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 15:01:29.313][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 15:01:29.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.317][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 15:01:29.318][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 15:01:29.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.321][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 15:01:29.322][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 15:01:29.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.326][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:01:29.326][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 15:01:29.345][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 15:01:29.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.349][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 15:01:29.350][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 15:01:29.351][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 15:01:29.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.357][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 15:01:29.388][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.407][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 15:01:29.408][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.409][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:29.410][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.411][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.411][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.412][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.413][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:01:29.414][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:29.415][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.415][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 15:01:29.416][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:29.417][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.418][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.419][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:29.419][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:29.419][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:01:29.419][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:01:29.419][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:01:29.419][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:29.420][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.421][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.422][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:29.423][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.423][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.424][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.425][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.426][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:29.426][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:29.427][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.428][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.429][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 15:01:29.430][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.431][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:01:29.432][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.433][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:29.434][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.434][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.435][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.436][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.437][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:01:29.438][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:29.438][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.439][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 15:01:29.440][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:29.441][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.442][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.442][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:29.442][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:29.442][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:01:29.442][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:01:29.442][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:01:29.443][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:29.444][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.445][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.446][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:29.446][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.447][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.448][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.449][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.449][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:29.450][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:29.451][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.452][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.453][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 15:01:29.454][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.455][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 15:01:29.456][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.456][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:29.457][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.458][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.459][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.460][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.460][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:01:29.461][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:29.462][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.463][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 15:01:29.464][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:29.464][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.465][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.466][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.467][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:29.468][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.468][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.469][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:29.470][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.470][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.471][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.472][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.473][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:29.474][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:29.474][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.475][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.476][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 15:01:29.477][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.478][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:01:29.479][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.480][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:29.482][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.483][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.484][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.485][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.486][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:01:29.487][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:29.488][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.489][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 15:01:29.490][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:29.490][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.491][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.492][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.493][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:29.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.494][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.495][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:29.496][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.497][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.497][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.498][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.499][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:29.500][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:29.501][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.501][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.505][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:29.505][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.569][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 15:01:29.573][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 15:01:29.574][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 15:01:29.575][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 15:01:29.576][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 15:01:29.577][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 15:01:29.579][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 15:01:29.580][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 15:01:29.581][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 15:01:29.582][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 15:01:29.583][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 15:01:29.584][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 15:01:29.585][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 15:01:29.587][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 15:01:29.588][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:01:29.589][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:01:29.590][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 15:01:29.592][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 15:01:29.593][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 15:01:29.594][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 15:01:29.600][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 15:01:29.601][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 15:01:29.602][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 15:01:29.603][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 15:01:29.604][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 15:01:29.605][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 15:01:29.606][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 15:01:29.607][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 15:01:29.608][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 15:01:29.610][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 15:01:29.611][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 15:01:29.612][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 15:01:29.613][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 15:01:29.614][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 15:01:29.615][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 15:01:29.616][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 15:01:29.617][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 15:01:29.618][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 15:01:29.619][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 15:01:29.621][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 15:01:29.622][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 15:01:29.623][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 15:01:29.624][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 15:01:29.625][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 15:01:29.626][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 15:01:29.627][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:01:29.628][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 15:01:29.629][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 15:01:29.631][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 15:01:29.632][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 15:01:29.633][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 15:01:29.634][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 15:01:29.635][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 15:01:29.636][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 15:01:29.637][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 15:01:29.638][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 15:01:29.640][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 15:01:29.641][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 15:01:29.642][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 15:01:29.643][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 15:01:29.644][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 15:01:29.645][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 15:01:29.646][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 15:01:29.647][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 15:01:29.648][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 15:01:29.649][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 15:01:29.651][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 15:01:29.652][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 15:01:29.653][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 15:01:29.654][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 15:01:29.655][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 15:01:29.656][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 15:01:29.657][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 15:01:29.658][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 15:01:29.659][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 15:01:29.660][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 15:01:29.662][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 15:01:29.663][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 15:01:29.664][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 15:01:29.665][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 15:01:29.666][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 15:01:29.667][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 15:01:29.668][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 15:01:29.673][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 15:01:29.674][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:01:29.677][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:29.677][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.679][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:29.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:29.771][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2024-03-02 15:01:29.778][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2024-03-02 15:01:29.780][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.780][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.781][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.782][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:29.783][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.784][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.785][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.785][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.786][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:01:29.787][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:29.788][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.793][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2024-03-02 15:01:29.794][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2024-03-02 15:01:29.795][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2024-03-02 15:01:29.796][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:29.796][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:29.796][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:29.797][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:29.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.799][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:29.800][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:29.801][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:29.802][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:29.803][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2024-03-02 15:01:29.803][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2024-03-02 15:01:29.803][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:29.804][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:29.805][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:29.806][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:29.810][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2024-03-02 15:01:29.811][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:01:29.832][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2024-03-02 15:01:29.833][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2024-03-02 15:01:29.837][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2024-03-02 15:01:29.841][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2024-03-02 15:01:29.844][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2024-03-02 15:01:29.845][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2024-03-02 15:01:29.846][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2024-03-02 15:01:29.847][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2024-03-02 15:01:29.856][biodb::testThat]
biodb.INFO [2024-03-02 15:01:29.856][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-03-02 15:01:29.857][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:29.858][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:29.861][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000001-content.tsv".
biodb.DEBUG[2024-03-02 15:01:29.862][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:29.866][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-03-02 15:01:29.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:29.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:29.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:29.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:29.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:29.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:29.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:29.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:29.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:29.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:29.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:29.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:29.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.921][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:29.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:29.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:29.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:29.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:29.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:29.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:29.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:29.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:29.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:29.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:29.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:29.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:29.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:29.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:29.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:29.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:29.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:29.993][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:29.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:29.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.059][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.062][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:30.091][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000001.
biodb.TRACE[2024-03-02 15:01:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:30.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:30.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:30.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:30.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:30.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:30.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.163][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.197][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.220][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.247][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.248][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.274][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.277][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.301][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.325][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.337][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.344][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.345][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.347][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.351][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.354][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.361][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.365][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.368][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.411][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000002-content.tsv".
biodb.DEBUG[2024-03-02 15:01:30.437][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:30.438][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-03-02 15:01:30.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:30.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:30.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:30.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:30.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:30.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:30.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:30.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.465][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:30.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:30.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.507][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:30.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:30.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:30.551][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000002.
biodb.TRACE[2024-03-02 15:01:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.654][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.657][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.679][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.681][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.706][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.707][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.708][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.729][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.785][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.808][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.820][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.823][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.835][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.836][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.837][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.842][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.844][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.851][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.856][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.870][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA08040013-content.tsv".
biodb.DEBUG[2024-03-02 15:01:30.871][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:30.872][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-03-02 15:01:30.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:30.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:30.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:30.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:30.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:30.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:30.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:30.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:30.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.902][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:30.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.905][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:30.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:30.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.909][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:30.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:30.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:30.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:30.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:30.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:30.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:30.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:30.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.953][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.962][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:30.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:30.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:30.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.982][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:30.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:30.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:30.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:30.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:31.015][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA08040013.
biodb.TRACE[2024-03-02 15:01:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:31.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:31.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:31.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:31.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:31.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:31.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.037][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:31.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:31.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:31.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.069][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.072][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:31.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:31.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.094][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:31.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:31.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.119][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:31.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:31.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:31.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:31.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.143][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.144][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.146][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:31.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.167][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:31.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:31.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.169][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:31.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.192][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.193][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.229][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.239][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.240][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.265][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.305][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:31.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:31.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.308][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:31.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.315][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.319][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.320][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:31.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.326][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:31.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.329][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.333][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.334][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:31.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.336][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.340][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:31.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.343][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.347][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:31.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.354][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:31.355][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:31.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.357][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:31.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:31.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:31.364][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:31.372][biodb::testThat]
biodb.INFO [2024-03-02 15:01:31.373][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-02 15:01:31.373][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:31.374][biodb::testThat]
biodb.DEBUG[2024-03-02 15:01:31.376][private$loadEntries] Creating entries from ids [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.DEBUG[2024-03-02 15:01:31.383][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:01:31.385][cch$loadFileContent] Trying to load 3 files from cache: [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.TRACE[2024-03-02 15:01:31.388][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, FALSE".
biodb.TRACE[2024-03-02 15:01:31.389][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv".
biodb.DEBUG[2024-03-02 15:01:31.390][conn$getEntryContent] 2 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:31.391][conn$getEntryContent] 1 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2024-03-02 15:01:31.392][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:01:31.393][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 15:01:31.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:31.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:31.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:31.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:31.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:31.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:31.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:31.407][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv".
biodb.DEBUG[2024-03-02 15:01:31.422][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:31.423][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:31.424][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv".
biodb.TRACE[2024-03-02 15:01:32.787][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv).
biodb.DEBUG[2024-03-02 15:01:33.792][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:33.794][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/0fdeb15a49cfc75bfed9dd3f524ffa41.content"
biodb.TRACE[2024-03-02 15:01:33.809][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/0fdeb15a49cfc75bfed9dd3f524ffa41.request"
biodb.TRACE[2024-03-02 15:01:33.812][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA08040013.tsv"
biodb.DEBUG[2024-03-02 15:01:33.814][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:01:33.815][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:01:33.816][self$createEntryFromContent] Parsing 3 LIPID MAPS Structure entries.
biodb.DEBUG[2024-03-02 15:01:33.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:33.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:33.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:33.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:33.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:33.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:33.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:33.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:33.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:33.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:33.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:33.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:33.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:33.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:33.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:33.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:33.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:33.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:33.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:33.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:33.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:33.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:33.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:33.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.887][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.890][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:33.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:33.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:33.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:33.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:33.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:33.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:33.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:33.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:33.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:33.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:33.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:33.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:33.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:33.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:33.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.014][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.024][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:34.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.028][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:34.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:34.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:34.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:34.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:34.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:34.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:34.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:34.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:34.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:01:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:01:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.080][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:34.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:01:34.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:34.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:01:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:01:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:34.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:34.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:01:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.110][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:01:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:01:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:01:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.131][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:34.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.141][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:01:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:01:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:34.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:34.216][self$createEntryFromContent] Accession numbers: LMFA00000001, LMFA00000002, LMFA08040013.
biodb.TRACE[2024-03-02 15:01:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:34.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:34.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:34.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:34.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:34.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:34.262][biodb::testThat]
biodb.INFO [2024-03-02 15:01:34.263][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-02 15:01:34.264][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:34.265][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:34.267][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.268][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.270][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:34.271][function(conn, opt)] Testing searchForEntries() with entry "LMFA00000001" and field "name".
biodb.TRACE[2024-03-02 15:01:34.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:34.306][function(conn, opt)] With value "2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-03-02 15:01:34.322][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-03-02 15:01:34.334][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:34.335][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:34.352][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride".
biodb.TRACE[2024-03-02 15:01:34.993][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride).
biodb.DEBUG[2024-03-02 15:01:35.641][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:35.643][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content"
biodb.TRACE[2024-03-02 15:01:35.646][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.request"
biodb.DEBUG[2024-03-02 15:01:35.649][function(conn, opt)] With found IDs [1]: "LMFA00000001".
biodb.TRACE[2024-03-02 15:01:35.661][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:35.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:35.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.663][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:35.668][biodb::testThat]
biodb.INFO [2024-03-02 15:01:35.669][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-03-02 15:01:35.669][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:35.670][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:35.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:35.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:35.774][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-03-02 15:01:35.777][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:01:35.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-03-02 15:01:35.790][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:01:35.791][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.INFO [2024-03-02 15:01:35.806][biodb::testThat]
biodb.INFO [2024-03-02 15:01:35.807][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-03-02 15:01:35.808][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:35.809][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:35.818][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:35.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:35.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:35.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:35.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:35.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:35.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:35.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:35.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:35.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:35.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:35.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:35.874][biodb::testThat]
biodb.INFO [2024-03-02 15:01:35.875][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-02 15:01:35.876][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:35.877][biodb::testThat]
biodb.INFO [2024-03-02 15:01:35.885][biodb::testThat]
biodb.INFO [2024-03-02 15:01:35.886][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-02 15:01:35.886][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:35.887][biodb::testThat]
biodb.INFO [2024-03-02 15:01:35.894][biodb::testThat]
biodb.INFO [2024-03-02 15:01:35.895][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-02 15:01:35.896][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:35.897][biodb::testThat]
biodb.DEBUG[2024-03-02 15:01:35.900][function(conn, opt)] Trying to download "https://www.lipidmaps.org/data?LMID=LMFA00000001".
biodb.DEBUG[2024-03-02 15:01:36.687][getUrlContent] Use RCurl for downloading content of URL https://www.lipidmaps.org/data?LMID=LMFA00000001.
biodb.INFO [2024-03-02 15:01:37.115][biodb::testThat]
biodb.INFO [2024-03-02 15:01:37.116][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-02 15:01:37.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:37.124][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:37.130][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:37.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:37.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.132][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.135][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:37.137][biodb::testThat]
biodb.INFO [2024-03-02 15:01:37.137][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-03-02 15:01:37.138][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:37.139][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:37.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:37.219][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-03-02 15:01:37.222][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:01:37.223][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-03-02 15:01:37.224][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:01:37.225][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2024-03-02 15:01:37.278][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-03-02 15:01:37.281][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:01:37.282][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-03-02 15:01:37.283][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:01:37.284][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.TRACE[2024-03-02 15:01:37.297][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:01:37.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:01:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:01:37.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:01:37.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:37.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2024-03-02 15:01:37.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:37.336][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:37.337][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2024-03-02 15:01:41.251][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2024-03-02 15:01:52.518][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:52.520][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.content"
biodb.TRACE[2024-03-02 15:01:52.562][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.request"
biodb.DEBUG[2024-03-02 15:01:53.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2024-03-02 15:01:53.457][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:53.458][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:53.460][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2024-03-02 15:01:54.145][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2024-03-02 15:01:54.788][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:54.790][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.content"
biodb.TRACE[2024-03-02 15:01:54.793][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.request"
biodb.DEBUG[2024-03-02 15:01:54.813][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.DEBUG[2024-03-02 15:01:54.816][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:54.817][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:54.818][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.TRACE[2024-03-02 15:01:55.462][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06).
biodb.DEBUG[2024-03-02 15:01:56.403][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:56.405][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.content"
biodb.TRACE[2024-03-02 15:01:56.408][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.request"
biodb.TRACE[2024-03-02 15:01:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:01:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:01:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:56.434][biodb::testThat]
biodb.INFO [2024-03-02 15:01:56.435][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-03-02 15:01:56.435][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:56.436][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:01:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:01:56.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:01:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:01:56.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:01:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:01:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:01:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:01:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:01:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:01:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:01:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:01:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:56.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:01:56.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:56.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:56.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:56.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:56.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:56.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:56.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:56.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:56.510][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:01:56.513][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:56.514][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:56.515][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.TRACE[2024-03-02 15:02:00.410][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01).
biodb.DEBUG[2024-03-02 15:02:11.907][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:11.909][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content"
biodb.TRACE[2024-03-02 15:02:11.942][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.request"
biodb.DEBUG[2024-03-02 15:02:12.952][private$loadEntries] Creating entries from ids [1]: "LMFA00000003".
biodb.DEBUG[2024-03-02 15:02:12.983][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:02:12.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "LMFA00000003".
biodb.TRACE[2024-03-02 15:02:12.986][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 15:02:12.987][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:12.988][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:12.989][conn$getEntryContent] 1 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2024-03-02 15:02:12.989][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:12.990][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 15:02:13.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:13.017][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.DEBUG[2024-03-02 15:02:13.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:13.020][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:13.021][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.TRACE[2024-03-02 15:02:13.671][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv).
biodb.DEBUG[2024-03-02 15:02:14.322][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:14.323][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.content"
biodb.TRACE[2024-03-02 15:02:14.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.request"
biodb.TRACE[2024-03-02 15:02:14.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000003.tsv"
biodb.DEBUG[2024-03-02 15:02:14.330][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:14.331][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:02:14.332][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-03-02 15:02:14.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:14.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:14.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:14.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:14.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:14.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:14.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:02:14.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:02:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.355][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:02:14.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 15:02:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:02:14.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 15:02:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.376][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:14.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:14.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:14.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:14.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:14.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:14.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:14.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:14.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:14.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:14.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:14.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:14.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.398][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:02:14.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:14.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:14.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:14.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-03-02 15:02:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:14.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.417][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.420][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:14.451][self$createEntryFromContent] Accession numbers: LMFA00000003.
biodb.DEBUG[2024-03-02 15:02:14.471][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:14.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:14.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:14.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:14.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:14.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:14.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:14.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:14.481][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.484][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.487][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.488][private$selectFields]
biodb.TRACE[2024-03-02 15:02:14.488][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:14.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:14.490][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.490][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.491][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.493][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.493][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.494][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.496][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.496][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.497][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.498][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.499][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.500][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.501][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:14.502][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.505][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.517][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:02:14.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:14.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:14.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:14.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:14.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:14.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:14.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:14.526][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.533][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.533][private$selectFields]
biodb.TRACE[2024-03-02 15:02:14.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:14.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:14.536][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.536][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.537][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.539][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.540][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.542][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.543][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.543][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.544][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.545][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.546][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.547][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:14.548][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.551][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:02:14.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:14.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:14.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:14.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:14.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:14.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:14.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:14.567][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.570][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.573][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.574][private$selectFields]
biodb.TRACE[2024-03-02 15:02:14.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:14.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:14.576][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.577][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.578][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.580][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.581][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.582][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.583][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.584][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:14.585][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.586][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.587][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.588][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:14.589][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.592][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.595][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:02:14.599][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:14.600][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:14.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:14.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:14.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:14.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:14.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:14.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:14.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:14.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:02:14.616][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:14.617][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:14.618][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.TRACE[2024-03-02 15:02:18.625][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01).
biodb.DEBUG[2024-03-02 15:02:30.346][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:30.348][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content"
biodb.TRACE[2024-03-02 15:02:30.383][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.request"
biodb.DEBUG[2024-03-02 15:02:31.402][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:31.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.437][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.440][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.458][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.459][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.461][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.462][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.463][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.464][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.465][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.466][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.467][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.468][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.476][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.477][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.478][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.481][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:02:31.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.505][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.508][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.509][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.511][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.512][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.513][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.514][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.515][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.516][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.518][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.519][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.520][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.520][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.521][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.524][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:31.525][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.528][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.531][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:02:31.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.546][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.549][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.553][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.554][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.555][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.556][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.557][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.558][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.560][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.561][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.562][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.563][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.564][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.565][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:31.566][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.567][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.569][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.570][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:31.571][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.574][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:02:31.736][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:31.737][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:31.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:31.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:02:31.751][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:31.752][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:31.754][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.TRACE[2024-03-02 15:02:35.737][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01).
biodb.DEBUG[2024-03-02 15:02:47.307][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:47.309][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content"
biodb.TRACE[2024-03-02 15:02:47.345][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.request"
biodb.DEBUG[2024-03-02 15:02:48.209][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:48.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:48.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:48.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:48.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:48.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:48.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:48.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.226][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.227][private$selectFields]
biodb.TRACE[2024-03-02 15:02:48.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:48.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:48.229][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.230][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.231][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.233][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.233][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.234][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.236][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.237][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.238][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.238][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.239][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.241][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:48.242][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:02:48.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:48.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:48.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:48.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:48.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:48.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:48.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:48.262][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.268][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.269][private$selectFields]
biodb.TRACE[2024-03-02 15:02:48.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:48.270][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:48.271][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.272][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.273][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.274][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.275][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.276][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.277][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.278][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.279][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.280][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.281][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.283][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:02:48.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:48.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:48.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:48.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:48.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:48.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:48.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:48.303][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.310][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.310][private$selectFields]
biodb.TRACE[2024-03-02 15:02:48.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:48.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:48.313][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.314][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.314][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.316][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.316][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.317][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.319][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.320][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:02:48.321][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.322][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.323][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.324][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:02:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.331][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:02:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:02:48.335][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:48.336][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:48.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:48.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:48.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:48.355][biodb::testThat]
biodb.INFO [2024-03-02 15:02:48.356][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-03-02 15:02:48.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:48.357][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:48.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:48.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:48.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:48.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:48.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:48.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:48.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:48.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:48.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:48.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:48.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:48.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:48.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:48.474][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.DEBUG[2024-03-02 15:02:48.477][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:48.478][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:48.479][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.TRACE[2024-03-02 15:02:52.367][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375).
biodb.DEBUG[2024-03-02 15:03:03.440][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:03:03.441][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.content"
biodb.TRACE[2024-03-02 15:03:03.478][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.request"
biodb.DEBUG[2024-03-02 15:03:04.304][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:03:04.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:04.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:04.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:04.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:04.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:04.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:04.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:04.314][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.317][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.320][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.321][private$selectFields]
biodb.TRACE[2024-03-02 15:03:04.322][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:04.322][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:04.323][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.324][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.324][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.326][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.327][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.327][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.329][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.330][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.330][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.331][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.332][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.333][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.334][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:04.335][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.338][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.341][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:03:04.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:04.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:04.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:04.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:04.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:04.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:04.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.360][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.361][private$selectFields]
biodb.TRACE[2024-03-02 15:03:04.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:04.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:04.363][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.364][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.364][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.367][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.367][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.369][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.370][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.371][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.371][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.372][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.374][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.374][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:04.375][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.378][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:03:04.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:04.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:04.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:04.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:04.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:04.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:04.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:04.394][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.400][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.401][private$selectFields]
biodb.TRACE[2024-03-02 15:03:04.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:04.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:04.403][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.404][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.404][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.406][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.407][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.409][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.410][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:04.411][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.412][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.413][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.414][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:04.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.418][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.421][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:04.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:04.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:03:04.425][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:03:04.426][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:03:04.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:04.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:04.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:04.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:04.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:04.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:04.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:03:04.438][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.DEBUG[2024-03-02 15:03:04.440][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:03:04.441][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:03:04.443][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.TRACE[2024-03-02 15:03:08.424][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911).
biodb.DEBUG[2024-03-02 15:03:19.943][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:03:19.945][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.content"
biodb.TRACE[2024-03-02 15:03:19.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.request"
biodb.DEBUG[2024-03-02 15:03:20.992][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:03:20.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:20.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:20.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:21.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:21.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:21.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:21.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.006][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.009][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.010][private$selectFields]
biodb.TRACE[2024-03-02 15:03:21.010][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:21.011][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:21.012][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.013][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.013][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.015][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.016][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.016][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.019][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.019][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.020][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.021][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.023][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.031][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:03:21.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:21.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:21.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:21.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:21.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:21.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:21.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:21.044][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.047][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.050][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.050][private$selectFields]
biodb.TRACE[2024-03-02 15:03:21.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:21.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:21.053][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.053][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.054][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.056][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.057][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.059][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.060][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.061][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.061][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.064][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:21.064][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.067][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:03:21.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:21.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:21.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:21.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:21.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:21.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:21.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:21.083][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.086][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.090][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.090][private$selectFields]
biodb.TRACE[2024-03-02 15:03:21.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:21.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:21.093][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.093][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.094][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.097][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.097][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.100][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.100][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:21.101][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.102][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.104][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:21.105][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.108][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:21.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:03:21.115][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:03:21.116][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:03:21.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:21.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:21.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:21.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:21.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:21.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:21.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:03:21.128][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.DEBUG[2024-03-02 15:03:21.130][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:03:21.131][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:03:21.132][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.TRACE[2024-03-02 15:03:25.236][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435).
biodb.DEBUG[2024-03-02 15:03:36.360][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:03:36.362][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.content"
biodb.TRACE[2024-03-02 15:03:36.404][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.request"
biodb.DEBUG[2024-03-02 15:03:37.359][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:03:37.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:37.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:37.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:37.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:37.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:37.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:37.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:37.370][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.373][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.375][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.376][private$selectFields]
biodb.TRACE[2024-03-02 15:03:37.377][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:37.377][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:37.378][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.379][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.380][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.381][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.382][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.383][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.384][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.385][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.385][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.386][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.387][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.388][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.389][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:37.390][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:03:37.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:37.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:37.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:37.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:37.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:37.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:37.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.414][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.414][private$selectFields]
biodb.TRACE[2024-03-02 15:03:37.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:37.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:37.417][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.417][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.418][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.419][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.420][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.421][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.422][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.423][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.424][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.424][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.425][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.426][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.427][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:37.428][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.434][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:03:37.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:37.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:37.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:37.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:37.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:37.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:37.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.452][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.453][private$selectFields]
biodb.TRACE[2024-03-02 15:03:37.454][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:37.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:37.455][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.456][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.457][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.458][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.459][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.460][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.461][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.462][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.463][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:37.463][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.464][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.466][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.474][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:37.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:03:37.479][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:03:37.479][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:03:37.487][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:37.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.491][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:37.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:37.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.494][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:37.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:37.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:03:37.501][biodb::testThat]
biodb.INFO [2024-03-02 15:03:37.501][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-03-02 15:03:37.502][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:03:37.503][biodb::testThat]
biodb.TRACE[2024-03-02 15:03:37.505][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:03:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:03:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.508][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:03:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:03:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.511][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:03:37.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:03:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:37.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:37.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:37.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:03:37.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:37.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:37.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:37.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:37.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:37.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:37.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:03:37.586][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:03:37.589][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:03:37.590][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-03-02 15:03:37.591][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:03:37.623][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-03-02 15:03:38.456][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:03:38.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:38.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:38.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:38.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:38.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:38.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:38.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:38.467][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.474][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.474][private$selectFields]
biodb.TRACE[2024-03-02 15:03:38.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:38.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:38.477][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.477][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.478][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.480][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.481][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.483][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.483][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.484][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.485][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.486][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.487][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.488][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:38.489][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.492][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.498][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:03:38.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:38.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:38.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:38.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:38.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:38.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:38.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:38.508][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.511][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.514][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.515][private$selectFields]
biodb.TRACE[2024-03-02 15:03:38.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:38.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:38.517][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.517][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.518][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.520][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.520][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.521][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.523][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.524][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.525][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.526][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.527][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.528][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:03:38.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:38.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:38.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:38.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:38.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:38.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:38.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:38.548][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.555][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.555][private$selectFields]
biodb.TRACE[2024-03-02 15:03:38.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:38.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:38.557][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.558][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.559][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.561][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.561][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.562][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.564][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.565][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.565][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:38.566][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.567][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.569][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.573][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:38.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:38.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:38.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:03:38.581][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:03:38.582][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:03:38.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:38.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:38.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:38.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:38.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:38.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:38.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:03:38.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:03:38.596][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:03:38.597][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-03-02 15:03:38.598][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:03:38.627][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-03-02 15:03:39.454][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:03:39.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:39.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:39.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:39.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:39.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:39.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:39.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.472][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.473][private$selectFields]
biodb.TRACE[2024-03-02 15:03:39.473][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:39.474][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:39.475][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.476][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.476][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.479][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.480][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.481][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.482][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.483][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.484][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.484][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.486][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.487][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:03:39.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:39.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:39.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:39.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:39.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:39.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:39.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.509][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.513][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.513][private$selectFields]
biodb.TRACE[2024-03-02 15:03:39.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:39.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:39.515][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.516][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.517][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.518][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.519][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.520][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.522][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.523][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.524][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.525][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.527][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.531][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.534][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:03:39.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:39.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:39.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:39.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:39.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:39.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:39.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:39.547][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.553][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.554][private$selectFields]
biodb.TRACE[2024-03-02 15:03:39.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:39.555][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:39.556][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.557][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.558][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.560][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.561][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.563][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.563][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.564][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:39.565][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.566][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.568][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:39.569][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:39.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:03:39.581][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:03:39.581][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:03:39.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:39.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:39.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:39.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:39.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:39.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:39.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:03:39.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:03:39.597][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:03:39.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-03-02 15:03:39.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:03:39.626][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-03-02 15:03:40.610][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:03:40.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:40.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:40.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:40.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:40.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:40.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:40.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.627][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.628][private$selectFields]
biodb.TRACE[2024-03-02 15:03:40.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:40.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:40.630][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.631][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.631][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.634][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.635][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.637][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.638][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.638][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.639][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.641][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.641][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:03:40.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:40.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:40.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:40.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:40.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:40.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:40.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.668][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.668][private$selectFields]
biodb.TRACE[2024-03-02 15:03:40.669][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:40.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:40.671][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.671][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.672][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.674][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.674][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.675][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.678][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.678][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.679][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.680][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.682][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.682][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:40.683][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:03:40.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:40.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:40.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:40.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:40.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:40.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:40.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.706][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.709][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.710][private$selectFields]
biodb.TRACE[2024-03-02 15:03:40.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:40.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:40.712][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.713][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.714][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.716][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.717][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.718][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.719][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.720][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:40.720][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.721][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.724][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.734][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:03:40.735][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:03:40.736][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:03:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:03:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.767][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:03:40.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:03:40.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.773][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:03:40.775][biodb::testThat]
biodb.INFO [2024-03-02 15:03:40.775][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-03-02 15:03:40.776][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:03:40.777][biodb::testThat]
biodb.TRACE[2024-03-02 15:03:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:03:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:03:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.784][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:03:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:03:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.787][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:03:40.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:03:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:40.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:03:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:03:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:03:40.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:40.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:40.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:40.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:40.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:40.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:40.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:03:40.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:03:40.876][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:03:40.877][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:03:40.878][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.TRACE[2024-03-02 15:03:44.841][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11).
biodb.DEBUG[2024-03-02 15:03:56.465][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:03:56.467][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content"
biodb.TRACE[2024-03-02 15:03:56.509][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.request"
biodb.DEBUG[2024-03-02 15:03:57.479][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:03:57.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:57.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:57.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:57.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:57.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:57.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:57.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:57.491][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.497][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.498][private$selectFields]
biodb.TRACE[2024-03-02 15:03:57.499][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:57.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:57.500][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.501][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.502][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.505][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.506][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.507][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.508][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.509][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.509][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.510][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.512][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.513][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.521][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:03:57.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:57.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:57.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:57.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:57.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:57.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:57.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:57.534][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.538][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.541][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.542][private$selectFields]
biodb.TRACE[2024-03-02 15:03:57.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:57.544][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:57.544][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.545][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.546][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.548][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.549][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.550][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.551][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.552][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.553][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.554][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.555][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.556][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.560][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.566][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:03:57.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:57.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:57.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:57.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:57.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:57.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:57.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:03:57.577][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.584][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.585][private$selectFields]
biodb.TRACE[2024-03-02 15:03:57.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:03:57.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:03:57.587][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.588][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.589][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.590][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.591][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.592][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.594][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.595][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:03:57.596][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.597][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.598][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.599][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:03:57.600][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.604][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.607][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:03:57.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:03:57.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:03:57.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:03:57.611][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:03:57.612][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:03:57.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:03:57.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:03:57.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:03:57.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:03:57.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:03:57.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:03:57.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:03:57.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:03:57.627][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:03:57.628][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:03:57.629][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.TRACE[2024-03-02 15:04:01.848][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11).
biodb.DEBUG[2024-03-02 15:04:13.584][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:04:13.586][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content"
biodb.TRACE[2024-03-02 15:04:13.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.request"
biodb.DEBUG[2024-03-02 15:04:14.448][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:04:14.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:14.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:14.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:14.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:14.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:14.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:14.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.462][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.465][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.466][private$selectFields]
biodb.TRACE[2024-03-02 15:04:14.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:14.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:14.468][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.469][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.470][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.471][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.472][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.473][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.474][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.475][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.476][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.477][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.477][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.479][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.480][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:14.481][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.484][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:04:14.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:14.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:14.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:14.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:14.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:14.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:14.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:14.501][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.507][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.508][private$selectFields]
biodb.TRACE[2024-03-02 15:04:14.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:14.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:14.510][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.511][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.511][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.513][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.514][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.515][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.516][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.517][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.518][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.519][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.520][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.522][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.526][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:04:14.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:14.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:14.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:14.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:14.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:14.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:14.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:14.543][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.549][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.549][private$selectFields]
biodb.TRACE[2024-03-02 15:04:14.550][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:14.551][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:14.552][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.553][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.553][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.555][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.556][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.556][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.559][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.559][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:14.560][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.561][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.563][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.563][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:14.564][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.567][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.571][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:14.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:14.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:14.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:04:14.575][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:04:14.576][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:04:14.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:14.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:14.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:14.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:14.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:14.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:14.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:04:14.588][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:04:14.591][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:04:14.592][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:04:14.593][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.TRACE[2024-03-02 15:04:18.827][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11).
biodb.DEBUG[2024-03-02 15:04:30.542][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:04:30.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content"
biodb.TRACE[2024-03-02 15:04:30.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.request"
biodb.DEBUG[2024-03-02 15:04:31.409][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:04:31.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:31.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:31.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:31.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:31.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:31.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:31.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:31.420][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.427][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.427][private$selectFields]
biodb.TRACE[2024-03-02 15:04:31.428][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:31.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:31.430][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.430][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.431][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.434][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.434][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.437][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.437][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.438][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.439][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.440][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.441][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:31.442][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.446][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:04:31.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:31.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:31.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:31.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:31.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:31.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:31.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:31.462][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.469][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.470][private$selectFields]
biodb.TRACE[2024-03-02 15:04:31.470][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:31.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:31.472][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.473][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.473][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.475][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.476][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.477][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.479][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.480][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.480][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.481][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.483][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.484][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:04:31.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:31.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:31.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:31.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:31.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:31.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:31.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:31.504][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.508][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.511][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.512][private$selectFields]
biodb.TRACE[2024-03-02 15:04:31.513][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:31.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:31.514][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.515][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.516][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.517][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.518][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.519][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.522][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.523][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:31.524][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.524][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.527][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:31.528][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.531][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.534][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:31.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:31.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:31.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:04:31.539][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:04:31.539][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:04:31.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:31.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:31.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:31.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:31.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:31.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:31.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:04:31.570][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:04:31.573][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:04:31.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-03-02 15:04:31.575][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:04:31.625][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-03-02 15:04:32.448][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:04:32.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:32.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:32.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:32.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:32.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:32.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:32.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.462][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.465][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.466][private$selectFields]
biodb.TRACE[2024-03-02 15:04:32.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:32.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:32.468][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.469][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.470][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.472][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.472][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.473][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.475][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.476][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.476][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.477][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.478][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.480][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.485][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.488][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:04:32.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:32.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:32.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:32.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:32.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:32.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:32.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.508][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.509][private$selectFields]
biodb.TRACE[2024-03-02 15:04:32.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:32.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:32.511][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.512][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.513][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.514][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.515][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.516][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.517][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.518][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.519][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.520][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.521][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.523][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:32.524][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:04:32.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:32.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:32.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:32.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:32.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:32.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:32.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:32.594][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.597][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.601][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.601][private$selectFields]
biodb.TRACE[2024-03-02 15:04:32.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:32.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:32.604][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.604][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.605][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.608][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.609][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.610][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.611][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.612][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:32.613][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.614][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.616][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.616][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:32.617][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.620][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:32.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:32.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:32.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:04:32.628][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:04:32.629][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:04:32.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:32.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:32.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:32.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:32.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:32.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:32.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:04:32.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:04:32.645][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:04:32.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-03-02 15:04:32.647][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:04:32.676][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-03-02 15:04:33.506][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:04:33.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:33.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:33.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:33.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:33.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:33.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:33.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.524][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.525][private$selectFields]
biodb.TRACE[2024-03-02 15:04:33.526][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:33.527][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:33.528][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.528][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.530][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.531][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.532][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.533][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.535][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.536][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.537][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.537][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.540][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.547][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:04:33.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:33.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:33.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:33.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:33.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:33.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:33.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.567][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.568][private$selectFields]
biodb.TRACE[2024-03-02 15:04:33.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:33.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:33.571][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.571][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.572][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.574][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.575][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.575][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.577][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.578][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.579][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.580][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.581][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.584][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:33.585][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.610][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.614][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:04:33.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:33.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:33.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:33.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:33.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:33.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:33.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.629][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.632][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.633][private$selectFields]
biodb.TRACE[2024-03-02 15:04:33.634][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:33.635][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:33.635][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.636][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.638][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.640][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.641][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.643][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.643][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.645][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:33.645][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.646][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.648][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.649][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:33.650][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.657][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:33.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:04:33.662][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:04:33.663][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:04:33.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:33.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:33.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:33.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:33.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:33.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:33.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:04:33.691][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:04:33.694][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:04:33.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-03-02 15:04:33.696][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:04:33.725][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-03-02 15:04:34.574][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:04:34.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:34.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:34.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:34.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:34.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:34.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:34.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:34.586][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.589][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.593][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.593][private$selectFields]
biodb.TRACE[2024-03-02 15:04:34.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:34.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:34.596][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.596][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.598][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.599][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.600][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.601][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.603][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.604][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.604][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.605][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.606][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.608][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.609][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:34.610][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.617][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:04:34.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:34.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:34.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:34.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:34.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:34.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:34.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:34.632][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.635][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.638][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.639][private$selectFields]
biodb.TRACE[2024-03-02 15:04:34.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:34.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:34.642][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.642][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.643][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.668][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.669][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.671][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.672][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.673][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.673][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.674][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.676][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.677][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.681][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:04:34.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:34.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:34.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:34.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:34.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:34.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:34.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.701][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.704][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.705][private$selectFields]
biodb.TRACE[2024-03-02 15:04:34.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:34.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:34.707][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.708][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.709][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.710][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.711][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.712][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.713][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.714][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.715][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:34.716][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.717][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.718][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.719][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:34.720][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.723][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.726][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:34.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:34.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:34.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:04:34.731][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:04:34.731][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:04:34.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:34.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:34.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:34.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:34.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:34.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:34.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:04:34.762][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:04:34.765][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:04:34.765][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:04:34.767][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.TRACE[2024-03-02 15:04:38.721][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11).
biodb.DEBUG[2024-03-02 15:04:50.366][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:04:50.368][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content"
biodb.TRACE[2024-03-02 15:04:50.409][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.request"
biodb.DEBUG[2024-03-02 15:04:51.259][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:04:51.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:51.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:51.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:51.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:51.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:51.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:51.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.278][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.278][private$selectFields]
biodb.TRACE[2024-03-02 15:04:51.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:51.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:51.281][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.281][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.282][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.284][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.285][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.286][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.288][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.288][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.289][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.290][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.291][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.292][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.293][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.297][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:04:51.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:51.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:51.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:51.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:51.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:51.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:51.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.322][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.323][private$selectFields]
biodb.TRACE[2024-03-02 15:04:51.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:51.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:51.326][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.326][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.327][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.329][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.330][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.331][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.333][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.334][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.335][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.336][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.337][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.338][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:04:51.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:51.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:51.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:51.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:51.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:51.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:51.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:04:51.359][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.366][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.366][private$selectFields]
biodb.TRACE[2024-03-02 15:04:51.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:04:51.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:04:51.369][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.370][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.370][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.372][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.373][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.374][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.376][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.377][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:04:51.378][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.379][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.380][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.381][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:04:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:04:51.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:04:51.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:04:51.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:04:51.393][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:04:51.393][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:04:51.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:04:51.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:04:51.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:04:51.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:04:51.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:04:51.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:04:51.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:04:51.406][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:04:51.409][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:04:51.410][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:04:51.412][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.TRACE[2024-03-02 15:04:55.320][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11).
biodb.DEBUG[2024-03-02 15:05:06.494][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:05:06.496][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content"
biodb.TRACE[2024-03-02 15:05:06.541][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.request"
biodb.DEBUG[2024-03-02 15:05:07.394][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:07.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:07.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:07.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:07.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:07.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:07.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:07.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.409][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.412][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.413][private$selectFields]
biodb.TRACE[2024-03-02 15:05:07.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:07.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:07.415][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.416][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.417][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.419][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.420][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.420][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.422][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.423][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.424][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.425][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.426][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.428][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:07.429][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.433][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:07.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:07.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:07.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:07.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:07.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:07.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:07.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:07.450][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.457][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.458][private$selectFields]
biodb.TRACE[2024-03-02 15:05:07.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:07.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:07.460][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.461][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.462][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.464][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.465][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.467][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.468][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.468][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.469][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.471][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.472][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:07.473][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.480][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:07.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:07.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:07.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:07.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:07.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:07.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:07.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.497][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.501][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.502][private$selectFields]
biodb.TRACE[2024-03-02 15:05:07.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:07.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:07.504][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.505][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.506][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.507][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.508][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.509][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.511][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.511][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.512][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:07.513][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.514][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.516][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:07.517][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.520][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:07.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:07.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:07.528][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:07.529][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:07.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:07.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:07.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:07.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:07.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:07.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:07.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:07.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:05:07.544][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:05:07.545][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:05:07.547][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.TRACE[2024-03-02 15:05:11.570][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11).
biodb.DEBUG[2024-03-02 15:05:22.943][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:05:22.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content"
biodb.TRACE[2024-03-02 15:05:22.989][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.request"
biodb.DEBUG[2024-03-02 15:05:23.854][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:23.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:23.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:23.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:23.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:23.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:23.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:23.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:23.866][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.869][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.873][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.874][private$selectFields]
biodb.TRACE[2024-03-02 15:05:23.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:23.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:23.876][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.877][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.878][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.880][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.881][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.882][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.884][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.885][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.886][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.887][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.887][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.890][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:23.891][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.895][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.898][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:23.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:23.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:23.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:23.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:23.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:23.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:23.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.916][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.920][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.921][private$selectFields]
biodb.TRACE[2024-03-02 15:05:23.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:23.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:23.923][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.924][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.925][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.926][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.927][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.928][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.929][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.930][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.931][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.932][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.933][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.934][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.935][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:23.936][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.942][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:23.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:23.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:23.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:23.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:23.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:23.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:23.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:23.956][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.960][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.964][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.964][private$selectFields]
biodb.TRACE[2024-03-02 15:05:23.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:23.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:23.967][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.968][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.969][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.970][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.971][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.972][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.975][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.975][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:23.976][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.977][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:23.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:23.980][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:23.981][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.001][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.005][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.009][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:24.009][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:24.010][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:24.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:24.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:24.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:24.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:24.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:24.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:24.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:24.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:05:24.048][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:24.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "856708e2bbeea806179c75604ab7003a".
biodb.TRACE[2024-03-02 15:05:24.051][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:24.099][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content".
biodb.DEBUG[2024-03-02 15:05:24.948][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:24.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:24.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:24.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:24.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:24.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:24.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:24.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.967][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:24.967][private$selectFields]
biodb.TRACE[2024-03-02 15:05:24.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:24.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:24.970][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:24.971][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.972][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.973][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.974][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.975][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.976][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.977][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:24.978][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:24.979][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.980][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.981][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.982][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.986][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.990][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:24.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:24.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:24.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:24.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:25.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:25.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:25.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:25.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:25.004][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.011][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:25.012][private$selectFields]
biodb.TRACE[2024-03-02 15:05:25.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:25.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:25.014][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:25.015][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.016][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.018][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.019][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.020][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.021][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:25.022][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:25.023][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.023][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.025][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.026][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:25.026][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.030][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.033][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:25.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:25.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:25.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:25.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:25.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:25.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:25.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.050][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.053][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:25.054][private$selectFields]
biodb.TRACE[2024-03-02 15:05:25.055][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:25.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:25.073][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:25.074][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.075][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.078][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.079][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.081][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:25.082][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:25.083][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.084][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.086][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:25.087][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.090][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.093][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:25.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:25.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:25.097][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:25.098][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:25.098][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:25.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:25.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:25.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:25.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:25.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:25.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:25.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:25.111][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:05:25.114][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:25.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "213dc74fea82b4e00a3de9c6296d60ac".
biodb.TRACE[2024-03-02 15:05:25.116][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:25.146][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content".
biodb.DEBUG[2024-03-02 15:05:25.989][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:25.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:25.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:25.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:25.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:25.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:25.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:25.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.007][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.008][private$selectFields]
biodb.TRACE[2024-03-02 15:05:26.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:26.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:26.011][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.012][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.013][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.015][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.016][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.018][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.019][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.020][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.020][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.023][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:26.024][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.027][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:26.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:26.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:26.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:26.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:26.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:26.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:26.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.071][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.071][private$selectFields]
biodb.TRACE[2024-03-02 15:05:26.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:26.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:26.074][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.075][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.076][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.078][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.079][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.081][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.082][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.083][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.084][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.086][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.090][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.097][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:26.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:26.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:26.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:26.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:26.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:26.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:26.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:26.107][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.114][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.115][private$selectFields]
biodb.TRACE[2024-03-02 15:05:26.116][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:26.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:26.117][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.118][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.119][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.122][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.123][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.124][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.125][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.126][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:26.127][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.127][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.130][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:26.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:26.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:26.143][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:26.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:26.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:26.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:26.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:26.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:26.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:26.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:26.156][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:05:26.159][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:26.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "599a9d63e9d10326d614f066b3a2769e".
biodb.TRACE[2024-03-02 15:05:26.161][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:26.191][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content".
biodb.DEBUG[2024-03-02 15:05:27.051][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:27.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:27.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:27.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:27.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:27.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:27.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:27.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:27.064][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.071][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.072][private$selectFields]
biodb.TRACE[2024-03-02 15:05:27.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:27.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:27.074][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.075][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.076][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.078][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.079][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.081][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.082][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.083][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.084][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.086][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:27.087][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.090][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.093][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.097][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:27.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:27.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:27.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:27.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:27.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:27.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:27.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:27.107][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.114][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.115][private$selectFields]
biodb.TRACE[2024-03-02 15:05:27.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:27.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:27.117][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.118][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.118][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.121][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.122][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.124][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.125][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.126][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.127][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.129][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:27.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:27.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:27.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:27.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:27.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:27.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:27.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.154][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.157][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.158][private$selectFields]
biodb.TRACE[2024-03-02 15:05:27.158][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:27.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:27.160][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.161][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.161][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.163][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.164][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.165][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.167][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.168][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:27.169][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.170][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.171][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.172][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.179][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:27.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:27.184][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:27.184][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:27.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:27.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:27.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:27.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:27.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:27.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:27.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:27.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:27.218][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:27.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-03-02 15:05:27.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:27.251][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-03-02 15:05:28.124][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:28.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:28.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:28.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:28.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:28.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:28.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:28.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.142][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.143][private$selectFields]
biodb.TRACE[2024-03-02 15:05:28.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:28.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:28.146][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.147][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.148][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.149][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.150][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.151][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.153][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.154][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.155][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.156][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.157][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.158][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:28.159][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.169][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:28.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:28.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:28.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:28.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:28.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:28.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:28.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:28.180][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.183][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.186][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.187][private$selectFields]
biodb.TRACE[2024-03-02 15:05:28.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:28.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:28.189][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.190][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.191][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.192][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.193][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.194][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.195][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.196][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.197][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.198][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.199][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.200][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.201][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.208][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:28.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:28.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:28.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:28.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:28.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:28.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:28.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:28.256][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.259][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.262][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.263][private$selectFields]
biodb.TRACE[2024-03-02 15:05:28.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:28.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:28.266][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.266][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.267][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.270][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.271][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.272][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.273][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.274][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:28.275][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.275][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.277][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.278][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:28.279][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.282][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.286][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:28.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:28.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:28.290][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:28.291][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:28.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:28.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:28.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:28.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:28.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:28.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:28.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:28.304][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:28.307][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:28.308][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-03-02 15:05:28.310][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:28.340][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-03-02 15:05:29.219][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:29.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:29.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:29.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:29.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:29.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:29.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:29.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.238][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.238][private$selectFields]
biodb.TRACE[2024-03-02 15:05:29.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:29.240][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:29.241][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.242][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.243][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.245][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.246][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.248][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.248][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.249][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.250][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.251][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.252][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.253][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.257][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.261][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:29.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:29.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:29.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:29.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:29.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:29.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:29.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:29.275][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.281][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.282][private$selectFields]
biodb.TRACE[2024-03-02 15:05:29.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:29.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:29.284][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.285][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.286][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.288][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.289][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.289][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.291][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.292][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.293][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.293][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.294][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.296][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.297][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.301][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.304][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.308][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:29.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:29.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:29.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:29.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:29.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:29.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:29.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.325][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.326][private$selectFields]
biodb.TRACE[2024-03-02 15:05:29.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:29.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:29.328][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.329][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.330][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.331][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.332][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.333][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.334][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.335][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.336][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:29.337][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.338][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.339][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.340][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:29.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:29.352][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:29.353][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:29.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:29.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:29.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:29.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:29.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:29.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:29.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:29.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:29.368][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:29.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-03-02 15:05:29.370][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:29.400][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-03-02 15:05:30.281][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:30.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:30.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:30.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:30.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:30.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:30.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:30.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.300][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.301][private$selectFields]
biodb.TRACE[2024-03-02 15:05:30.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:30.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:30.304][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.305][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.305][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.308][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.309][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.311][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.312][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.313][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.314][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.315][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.316][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:30.317][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.324][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:30.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:30.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:30.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:30.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:30.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:30.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:30.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:30.338][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.345][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.346][private$selectFields]
biodb.TRACE[2024-03-02 15:05:30.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:30.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:30.348][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.349][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.350][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.351][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.352][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.353][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.355][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.356][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.357][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.358][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.360][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.365][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.368][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:30.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:30.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:30.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:30.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:30.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:30.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:30.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.389][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.390][private$selectFields]
biodb.TRACE[2024-03-02 15:05:30.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:30.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:30.393][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.394][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.394][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.396][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.397][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.398][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.399][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.400][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.401][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:30.402][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.403][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.405][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:30.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:30.435][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:30.436][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:30.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:30.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:30.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:30.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:30.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:30.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:30.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:30.474][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:05:30.477][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:30.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ec7b47285bd6f593d724b6f7745f0646".
biodb.TRACE[2024-03-02 15:05:30.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:30.509][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content".
biodb.DEBUG[2024-03-02 15:05:31.376][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:31.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:31.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:31.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:31.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:31.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:31.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:31.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.394][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.395][private$selectFields]
biodb.TRACE[2024-03-02 15:05:31.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:31.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:31.397][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.398][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.399][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.401][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.401][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.402][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.405][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.406][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.406][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.407][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.410][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:31.410][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:31.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:31.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:31.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:31.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:31.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:31.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:31.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.438][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.438][private$selectFields]
biodb.TRACE[2024-03-02 15:05:31.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:31.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:31.441][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.442][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.442][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.444][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.445][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.446][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.448][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.449][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.450][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.451][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.452][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.453][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.457][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.461][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:31.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:31.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:31.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:31.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:31.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:31.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:31.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.482][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.483][private$selectFields]
biodb.TRACE[2024-03-02 15:05:31.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:31.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:31.485][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.486][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.487][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.489][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.489][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.490][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.492][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.493][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.494][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:31.494][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.495][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.497][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.505][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:31.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:31.508][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:31.509][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:31.510][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:31.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:31.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:31.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:31.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:31.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:31.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:31.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:31.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:05:31.526][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:31.527][cch$loadFileContent] Trying to load 1 files from cache: [1]: "236b5f2d20f6da60d3d5e29141c3c6fd".
biodb.TRACE[2024-03-02 15:05:31.528][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:31.558][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content".
biodb.DEBUG[2024-03-02 15:05:32.412][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:32.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:32.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:32.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:33.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:33.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:33.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:33.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:33.417][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.424][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.424][private$selectFields]
biodb.TRACE[2024-03-02 15:05:33.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:33.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:33.427][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.427][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.428][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.431][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.431][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.434][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.434][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.435][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.436][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.439][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:33.440][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.446][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:33.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:33.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:33.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:33.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:33.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:33.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:33.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:33.460][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.467][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.468][private$selectFields]
biodb.TRACE[2024-03-02 15:05:33.469][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:33.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:33.470][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.471][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.472][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.474][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.475][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.477][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.477][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.478][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.479][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.480][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.484][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.487][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.491][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.498][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:33.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:33.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:33.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:33.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:33.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:33.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:33.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:33.509][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.512][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.515][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.516][private$selectFields]
biodb.TRACE[2024-03-02 15:05:33.516][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:33.517][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:33.518][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.519][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.520][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.522][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.523][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.525][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.525][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.526][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:33.527][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.528][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.529][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.530][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:33.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:33.541][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:33.542][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:33.543][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:33.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:33.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:33.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:33.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:33.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:33.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:33.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:33.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-03-02 15:05:33.558][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:33.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c0ec3345a6e512e30aa3c52ef1c02f40".
biodb.TRACE[2024-03-02 15:05:33.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:33.590][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content".
biodb.DEBUG[2024-03-02 15:05:34.423][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:34.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:34.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:34.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:35.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:35.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:35.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:35.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.574][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.574][private$selectFields]
biodb.TRACE[2024-03-02 15:05:35.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:35.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:35.577][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.578][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.579][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.580][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.581][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.582][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.584][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.585][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.586][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.587][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.589][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:35.590][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-03-02 15:05:35.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:35.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:35.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:35.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:35.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:35.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:35.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.617][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.617][private$selectFields]
biodb.TRACE[2024-03-02 15:05:35.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:35.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:35.620][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.620][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.621][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.623][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.623][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.624][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.626][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.627][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.627][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.628][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.629][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.631][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-03-02 15:05:35.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:35.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:35.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:35.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:35.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:35.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:35.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:35.652][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.656][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.659][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.660][private$selectFields]
biodb.TRACE[2024-03-02 15:05:35.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:35.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:35.662][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.663][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.664][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.666][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.667][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.667][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.669][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.670][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.670][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-03-02 15:05:35.671][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.672][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.673][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.674][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-03-02 15:05:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-03-02 15:05:35.686][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:35.687][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:05:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.709][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:05:35.719][biodb::testThat]
biodb.INFO [2024-03-02 15:05:35.720][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-03-02 15:05:35.721][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:05:35.722][biodb::testThat]
biodb.TRACE[2024-03-02 15:05:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:05:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:05:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:05:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:05:35.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.731][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:05:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:05:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:05:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:05:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:05:35.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:05:35.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:05:35.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:05:35.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:35.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:05:35.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:35.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:35.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:35.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:35.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:35.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:35.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:35.812][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:35.815][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:35.816][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-03-02 15:05:35.817][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:35.846][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-03-02 15:05:36.864][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:36.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:36.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:36.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:36.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:36.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:36.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:36.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:36.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:36.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:36.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.906][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:36.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:36.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:36.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:36.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:36.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.929][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:36.929][private$selectFields]
biodb.TRACE[2024-03-02 15:05:36.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:36.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:36.932][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:36.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:36.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:36.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.935][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.938][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.939][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.940][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.942][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.942][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:36.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:36.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.945][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.946][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:36.946][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.948][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:36.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:36.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.951][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.952][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:36.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:36.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.954][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:36.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:36.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.958][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.958][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:36.959][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:36.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.961][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.964][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.964][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.965][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.967][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.968][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:36.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:36.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.970][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.971][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:36.972][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:36.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.973][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:36.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:36.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.978][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:36.978][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:36.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:36.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:36.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.984][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.985][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:36.985][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:36.986][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:36.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:36.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:36.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.994][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.995][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:36.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:36.996][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:36.997][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:36.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:36.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.000][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.001][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.002][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.007][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.008][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.010][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.014][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.127][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-03-02 15:05:37.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:37.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:37.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:37.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:37.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:37.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:37.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.168][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.172][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.194][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:37.195][private$selectFields]
biodb.TRACE[2024-03-02 15:05:37.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:37.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:37.197][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:37.198][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.205][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.205][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.208][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.210][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.211][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.212][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.216][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.217][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.219][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.220][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.223][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.223][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.226][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.229][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.230][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.231][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.233][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.234][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.235][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.236][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.237][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.239][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.243][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.245][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.248][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.249][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:37.250][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:37.250][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.253][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.256][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.257][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.258][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.259][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.260][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.261][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.262][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.263][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.264][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.266][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.269][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.272][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.272][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.276][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:37.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.319][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-03-02 15:05:37.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:37.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:37.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:37.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:37.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:37.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:37.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:37.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.405][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.431][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:37.432][private$selectFields]
biodb.TRACE[2024-03-02 15:05:37.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:37.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:37.434][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:37.435][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.437][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.442][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.442][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.444][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.445][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.448][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.449][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.450][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.453][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.454][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.457][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.461][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:37.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.467][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.468][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.469][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.470][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.473][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.474][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.476][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.479][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.480][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.481][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.482][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.486][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:37.487][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:37.488][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.490][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.491][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.492][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.494][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.498][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.498][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.500][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.503][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.504][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.506][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.508][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.509][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.510][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:37.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:37.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:37.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:37.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:37.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:37.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:37.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:37.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-03-02 15:05:37.594][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:37.595][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:37.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:37.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:37.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:37.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:37.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:37.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:37.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:37.608][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:37.610][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:37.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-03-02 15:05:37.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:37.641][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-03-02 15:05:38.463][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:38.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:38.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:38.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:38.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:38.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:38.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:38.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.523][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:38.524][private$selectFields]
biodb.TRACE[2024-03-02 15:05:38.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:38.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:38.527][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:38.527][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.530][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.535][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.535][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.537][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.541][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.542][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.546][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.547][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.550][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.553][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.554][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.560][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.561][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.562][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.579][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.582][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.582][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.583][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.585][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.589][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.592][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.599][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.600][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:38.601][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:38.602][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.604][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.608][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.609][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.611][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.611][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.612][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.614][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.614][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.615][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.617][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.620][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.621][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.623][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.627][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.627][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-03-02 15:05:38.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:38.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:38.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:38.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:38.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:38.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:38.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.766][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.769][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.792][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:38.793][private$selectFields]
biodb.TRACE[2024-03-02 15:05:38.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:38.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:38.795][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:38.796][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.799][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.803][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.803][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.805][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.806][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.808][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.809][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.810][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.811][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.815][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.819][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.822][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.828][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.829][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.831][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.834][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.835][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.840][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.843][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.845][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.846][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.847][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:38.848][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:38.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.851][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.854][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.855][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.856][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.857][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.858][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.860][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.861][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.862][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.863][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.867][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.870][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.873][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.874][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.928][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:38.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:38.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:38.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-03-02 15:05:38.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:38.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:38.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:38.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:38.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:38.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:38.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:38.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:38.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:38.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:39.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:39.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.003][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.006][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:39.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:39.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:39.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.029][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:39.030][private$selectFields]
biodb.TRACE[2024-03-02 15:05:39.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:39.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:39.032][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:39.033][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:39.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:39.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:39.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:39.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.039][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.040][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.042][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:39.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:39.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.045][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.046][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.052][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:39.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:39.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.058][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:39.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:39.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:39.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:39.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.064][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.065][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.065][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.067][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:39.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:39.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.071][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.072][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.074][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.078][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:39.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:39.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.084][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:39.084][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:39.085][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:39.086][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:39.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.088][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.089][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.091][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:39.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:39.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.094][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.095][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.096][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.097][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.101][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:39.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:39.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.108][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:39.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:39.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:39.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:39.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:39.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:39.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:39.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:39.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:39.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:39.190][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-03-02 15:05:39.192][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:39.193][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:39.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:39.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:39.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:39.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:39.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:39.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:39.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:39.206][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:39.209][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:39.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-03-02 15:05:39.211][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:39.240][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-03-02 15:05:40.071][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:40.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:40.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:40.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:40.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:40.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:40.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:40.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.134][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.135][private$selectFields]
biodb.TRACE[2024-03-02 15:05:40.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:40.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:40.137][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.138][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.143][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.144][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.145][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.147][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.147][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.150][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.151][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.151][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.153][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.156][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.157][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.163][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.165][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.169][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.169][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.170][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.172][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.172][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.175][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.176][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.176][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.178][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.182][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.184][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.186][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.187][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.188][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.189][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.190][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.215][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.216][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.218][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.219][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.222][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.223][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.224][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.227][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.228][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.230][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.233][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.234][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.281][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-03-02 15:05:40.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:40.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:40.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:40.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:40.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:40.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:40.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:40.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.357][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.380][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.426][private$selectFields]
biodb.TRACE[2024-03-02 15:05:40.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:40.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:40.433][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.437][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.444][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.445][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.446][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.448][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.450][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.451][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.452][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.454][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.457][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.458][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.464][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.467][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.471][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.471][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.474][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.476][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.477][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.478][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.495][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.498][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.508][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.510][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.511][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.511][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.512][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.518][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.519][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.520][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.522][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.523][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.525][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.525][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.526][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.528][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.531][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.532][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.535][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.536][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.538][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.538][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-03-02 15:05:40.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:40.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:40.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:40.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:40.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:40.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:40.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.706][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.730][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.731][private$selectFields]
biodb.TRACE[2024-03-02 15:05:40.732][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:40.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:40.733][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.734][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.740][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.741][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.742][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.743][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.744][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.746][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.747][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.748][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.749][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.753][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.753][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.759][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.760][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.773][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:40.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.777][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.777][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.778][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.780][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.781][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.784][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.785][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.789][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.790][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.792][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.796][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.797][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:40.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.800][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.801][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.802][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.803][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.804][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.807][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.808][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.809][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.812][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.813][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.815][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.819][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.819][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:40.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:40.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.856][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:40.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:40.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-03-02 15:05:40.892][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:40.893][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:40.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:40.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:40.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:40.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:40.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:40.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:40.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:40.911][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:40.913][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:40.914][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-03-02 15:05:40.915][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:40.945][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-03-02 15:05:41.770][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:41.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:41.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:41.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:41.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:41.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:41.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:41.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:41.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:41.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:41.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:41.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:41.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:41.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:41.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:41.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:41.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.971][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:41.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:41.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:41.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:41.999][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.038][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:42.039][private$selectFields]
biodb.TRACE[2024-03-02 15:05:42.040][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:42.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:42.042][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:42.042][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.049][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.050][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.052][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.055][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.057][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.059][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.060][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.063][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.069][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.070][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.072][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.074][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.078][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.079][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.081][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.082][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.085][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.085][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.091][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.094][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.097][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.098][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.098][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.101][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:42.102][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:42.102][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.109][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.109][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.112][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.113][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.115][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.116][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.117][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.121][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.125][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.127][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.128][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.168][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.175][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-03-02 15:05:42.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:42.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:42.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:42.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:42.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:42.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:42.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.249][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.293][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:42.294][private$selectFields]
biodb.TRACE[2024-03-02 15:05:42.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:42.295][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:42.296][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:42.297][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.299][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.303][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.304][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.306][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.309][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.310][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.311][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.312][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.314][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.316][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.316][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.319][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.320][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.323][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.324][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.325][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.326][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.328][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.331][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.332][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.333][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.335][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.335][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.338][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.338][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.339][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.341][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.344][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.345][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.347][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.351][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.352][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.353][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.354][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:42.355][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:42.356][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.359][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.362][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.363][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.364][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.365][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.366][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.367][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.369][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.369][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.370][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.372][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.376][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.379][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.382][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.383][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:42.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.428][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-03-02 15:05:42.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:42.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:42.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:42.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:42.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:42.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:42.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.517][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.584][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:42.584][private$selectFields]
biodb.TRACE[2024-03-02 15:05:42.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:42.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:42.587][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:42.587][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.590][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.593][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.594][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.594][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.596][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.597][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.599][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.600][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.601][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.602][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.605][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.608][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.611][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.612][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.613][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.615][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.616][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.618][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:42.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.622][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.622][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.623][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.625][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.626][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.628][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.629][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.630][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.632][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.635][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.636][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.638][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.642][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.643][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.644][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:42.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.646][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:42.647][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:42.648][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.651][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.651][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.652][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.655][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.658][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.659][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.661][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.661][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.664][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.665][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.667][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.670][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.671][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:42.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:42.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.720][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.726][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:42.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:42.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:42.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-03-02 15:05:42.775][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:42.776][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:42.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:42.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:42.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:42.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:42.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:42.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:42.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:42.789][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:42.792][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:42.793][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-03-02 15:05:42.794][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:42.825][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-03-02 15:05:43.716][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:43.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:43.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:43.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:43.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:43.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:43.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:43.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:43.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:43.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:43.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:43.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:43.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:43.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:43.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.783][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:43.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:43.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:43.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:43.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:43.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.811][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.815][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:43.815][private$selectFields]
biodb.TRACE[2024-03-02 15:05:43.816][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:43.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:43.818][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:43.818][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:43.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:43.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.825][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.825][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.828][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:43.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:43.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.831][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.831][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.837][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:43.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:43.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.839][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.843][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.843][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:43.844][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:43.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.846][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.847][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:43.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:43.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.849][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.853][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.854][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.856][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:43.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:43.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.859][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.860][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.865][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:43.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:43.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.868][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.872][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:43.873][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:43.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.875][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:43.876][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:43.876][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:43.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:43.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.879][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.883][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.884][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.885][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.886][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:43.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:43.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.888][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.889][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.890][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.896][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:43.896][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:43.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.902][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:43.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:43.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:43.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:43.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:43.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:43.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:43.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:43.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:43.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:43.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:43.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:43.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-03-02 15:05:44.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:44.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:44.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:44.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:44.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:44.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:44.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.043][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.073][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.076][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:44.077][private$selectFields]
biodb.TRACE[2024-03-02 15:05:44.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:44.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:44.079][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:44.080][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.087][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.088][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.091][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.094][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.095][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.100][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.107][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.108][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.110][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.116][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.117][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.119][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.120][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.123][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.124][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.126][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.128][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.130][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.133][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.136][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.137][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.138][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.140][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:44.141][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:44.142][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.144][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.147][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.148][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.150][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.151][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.152][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.155][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.156][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.158][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.162][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.164][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.167][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.168][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.221][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-03-02 15:05:44.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:44.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:44.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:44.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:44.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:44.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:44.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.360][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:44.361][private$selectFields]
biodb.TRACE[2024-03-02 15:05:44.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:44.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:44.363][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:44.364][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.367][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.370][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.371][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.371][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.373][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.374][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.375][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.376][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.377][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.378][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.379][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.380][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.383][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.384][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.386][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.390][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.391][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.392][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.393][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.396][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:44.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.399][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.400][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.400][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.402][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.403][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.405][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.406][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.407][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.408][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.412][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.412][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.415][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.418][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.419][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.419][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:44.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.421][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.422][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:44.423][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:44.424][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.428][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.441][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.442][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.443][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.446][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.447][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.447][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.449][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.450][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.453][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.454][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.457][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.461][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:44.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:44.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:44.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:44.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:44.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:44.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:44.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:44.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-03-02 15:05:44.535][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:44.536][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:05:44.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:44.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:44.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:44.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:44.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:44.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:44.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:05:44.550][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-03-02 15:05:44.553][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:05:44.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-03-02 15:05:44.555][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:05:44.586][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-03-02 15:05:45.406][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:05:45.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:45.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:45.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:45.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:45.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:45.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:45.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.475][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:45.476][private$selectFields]
biodb.TRACE[2024-03-02 15:05:45.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:45.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:45.478][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:45.479][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.481][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.484][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.485][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.487][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.488][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.489][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.491][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.492][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.493][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.495][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.498][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.499][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.501][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.503][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.505][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.506][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.528][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.529][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.531][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.535][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.536][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.538][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.541][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.542][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.542][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.544][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.545][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.548][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.550][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.553][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.554][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.555][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.557][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:45.558][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:45.558][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.561][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.564][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.565][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.566][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.568][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.570][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.571][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.572][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.573][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.576][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.577][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.583][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.649][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.655][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-03-02 15:05:45.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:45.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:45.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:45.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:45.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:45.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:45.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.765][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:45.766][private$selectFields]
biodb.TRACE[2024-03-02 15:05:45.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:45.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:45.768][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:45.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.787][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.788][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.789][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.790][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.792][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.793][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.794][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.799][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.799][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.805][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.806][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.806][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.808][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.809][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.811][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.815][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.816][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.818][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.821][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.822][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.827][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.831][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.834][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.834][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:45.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.837][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:45.838][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:45.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.841][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.844][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.844][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.845][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.847][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.847][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.850][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.851][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.853][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.856][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.857][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.860][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.863][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.903][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.906][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.909][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:45.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-03-02 15:05:45.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:05:45.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:45.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:45.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:45.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:45.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:45.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:05:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:45.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:45.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:45.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.026][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:46.027][private$selectFields]
biodb.TRACE[2024-03-02 15:05:46.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:05:46.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:05:46.029][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-03-02 15:05:46.030][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:46.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:46.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:46.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:46.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.036][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.037][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.039][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:46.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:46.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.043][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.044][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.050][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:46.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:46.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.053][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.056][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:46.057][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:46.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.059][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:46.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:46.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 15:05:46.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 15:05:46.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.066][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.067][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.069][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:46.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:46.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.072][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.073][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.074][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.078][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:46.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:46.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.085][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:05:46.086][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:05:46.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.088][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:46.089][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:05:46.089][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:46.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:46.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.092][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.093][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.093][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.096][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:46.097][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:46.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.100][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.100][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.102][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:46.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:46.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.113][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-03-02 15:05:46.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:46.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:46.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:05:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:05:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:05:46.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:05:46.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:05:46.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.147][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.150][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-03-02 15:05:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:05:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:46.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:46.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:05:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:05:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:05:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-03-02 15:05:46.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:05:46.189][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:05:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:05:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:05:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:05:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:05:46.206][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 15:05:46.208][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2024-03-02 15:05:46.209][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2024-03-02 15:05:46.210][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 15:05:46.210][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:05:46.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:05:46.212][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:05:46.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:05:46.213][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:05:46.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 373 ]
> 
> proc.time()
   user  system elapsed 
 53.853   5.143 258.748

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbLipidmaps.Rcheck’
* using R version 4.3.2 Patched (2023-11-01 r85457)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbLipidmaps/DESCRIPTION’ ... OK
* this is package ‘biodbLipidmaps’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbLipidmaps’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbLipidmaps.Rcheck/00install.out

* installing *source* package ‘biodbLipidmaps’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbLipidmaps)