Back to BiocCheck report for a small subset of BioC 3.18 packages |
This page was generated on 2023-10-24 11:15:02 -0400 (Tue, 24 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4818 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 72/92 | Hostname | OS / Arch | BIOCCHECK | |||||||
Rhtslib 2.3.0 (landing page) Hervé Pagès
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | ERROR | |||||||
To the developers/maintainers of the Rhtslib package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Rhtslib |
Version: 2.3.0 |
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('Rhtslib_2.3.0.tar.gz')" |
StartedAt: 2023-10-24 10:47:59 -0400 (Tue, 24 Oct 2023) |
EndedAt: 2023-10-24 10:49:21 -0400 (Tue, 24 Oct 2023) |
EllapsedTime: 82.7 seconds |
RetCode: None |
Status: ERROR |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('Rhtslib_2.3.0.tar.gz')" ### ############################################################################## ############################################################################## ─ BiocCheckVersion: 1.39.0 ─ BiocVersion: 3.18 ─ Package: Rhtslib ─ PackageVersion: 2.3.0 ─ sourceDir: /tmp/RtmpBHbVsA/file38ef7de17e1ac/Rhtslib ─ installDir: /tmp/RtmpBHbVsA/file38ef7d3d6afaee ─ BiocCheckDir: /home/biocbuild/bbs-3.18-bioc-testing/meat/Rhtslib.BiocCheck ─ platform: unix ─ isTarBall: TRUE * Installing package... * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * Checking version number... * Checking for version number mismatch... * Checking version number validity... * Checking R version dependency... * Checking package size... * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... * Checking build system compatibility... * Checking for blank lines in DESCRIPTION... * Checking if DESCRIPTION is well formatted... * Checking for proper Description: field... * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version field... * Checking for valid maintainer... * NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with 'comment=c(ORCID="...")' * Checking License: for restrictive use... * NOTE: License 'LGPL (>= 2)' unknown; licenses cannot restrict use * Checking for recommeded fields in DESCRIPTION... * Checking for pinned package versions... * Checking DESCRIPTION/NAMESPACE consistency... * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... * NOTE: 'sessionInfo' not found in vignette(s) * Checking package installation calls in R code... * Checking for library/require of Rhtslib... * Checking coding practice... * NOTE: Avoid 'cat' and 'print' outside of 'show' methods * Checking parsed R code in R directory, examples, vignettes... * Checking function lengths... * Checking man page documentation... * Checking package NEWS... * Checking unit tests... * NOTE: Consider adding unit tests. We strongly encourage them. See https://contributions.bioconductor.org/tests.html * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 1 lines (0%) are > 80 characters long. * NOTE: Consider multiples of 4 spaces for line indents; 15 lines (6%) are not. See https://contributions.bioconductor.org/r-code.html See styler package: https://cran.r-project.org/package=styler as described in the BiocCheck vignette. * Checking if package already exists in CRAN... * Checking for bioc-devel mailing list subscription... * NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel mailing list (requires admin credentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel * Checking for support site registration... Maintainer is registered at support site. * ERROR: Maintainer must add package name to Watched Tags on the support site; Edit your Support Site User Profile to add Watched Tags. ─ BiocCheck results ── 1 ERRORS | 0 WARNINGS | 8 NOTES See the Rhtslib.BiocCheck folder and run browseVignettes(package = 'BiocCheck') for details.