Tim Peters
| Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024) |
| git_url: https://git.bioconductor.org/packages/DMRcate |
| git_branch: RELEASE_3_19 |
| git_last_commit: 9cd77de |
| git_last_commit_date: 2024-04-30 10:35:13 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-09 11:40:46 -0400 (Thu, 09 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4748 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4484 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4514 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 592/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DMRcate 3.0.0 (landing page) Tim Peters
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | TIMEOUT | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the DMRcate package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DMRcate.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: DMRcate |
| Version: 3.0.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data DMRcate |
| StartedAt: 2024-05-08 23:57:56 -0000 (Wed, 08 May 2024) |
| EndedAt: 2024-05-09 00:13:32 -0000 (Thu, 09 May 2024) |
| EllapsedTime: 936.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data DMRcate ### ############################################################################## ############################################################################## * checking for file ‘DMRcate/DESCRIPTION’ ... OK * preparing ‘DMRcate’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘EPICv1_and_450K.Rnw’ using knitr Quitting from lines at lines 36-41 [tcells] (EPICv1_and_450K.Rnw) Error: processing vignette 'EPICv1_and_450K.Rnw' failed with diagnostics: failed to load resource name: EH1136 title: FlowSorted.Blood.EPIC: Illumina Human Methylation data from EPIC on immunomagnetic sorted adult blood cell populations reason: error in evaluating the argument 'x' in selecting a method for function 'get': error reading from connection --- failed re-building ‘EPICv1_and_450K.Rnw’ --- re-building ‘EPICv2.Rnw’ using knitr --- finished re-building ‘EPICv2.Rnw’ --- re-building ‘sequencing.Rnw’ using knitr Quitting from lines at lines 38-43 [loadeh] (sequencing.Rnw) Error: processing vignette 'sequencing.Rnw' failed with diagnostics: failed to load resource name: EH1072 title: Bisulfite sequencing data from tissue Tregs (per sample) reason: error reading from connection --- failed re-building ‘sequencing.Rnw’ SUMMARY: processing the following files failed: ‘EPICv1_and_450K.Rnw’ ‘sequencing.Rnw’ Error: Vignette re-building failed. Execution halted