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Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> library(zellkonverter)
Registered S3 method overwritten by 'zellkonverter':
  method                                             from      
  py_to_r.pandas.core.arrays.categorical.Categorical reticulate
> 
> test_check("zellkonverter")
[ FAIL 20 | WARN 0 | SKIP 0 | PASS 0 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cellrank_pancreas.R:45:10'): Reading H5AD works ────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
     ▆
  1. ├─testthat::expect_warning(...) at test-cellrank_pancreas.R:44:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. └─zellkonverter::readH5AD(file) at test-cellrank_pancreas.R:45:10
  7.   └─basilisk::basiliskRun(...)
  8.     └─zellkonverter (local) fun(...)
  9.       └─reticulate::import("anndata")
 10.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-cellrank_pancreas.R:51:1'): (code run outside of `test_that()`) ──
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-cellrank_pancreas.R:51:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-example_anndata.R:21:5'): Reading H5AD works ───────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. └─zellkonverter::readH5AD(file) at test-example_anndata.R:21:5
 2.   └─basilisk::basiliskRun(...)
 3.     └─zellkonverter (local) fun(...)
 4.       └─reticulate::import("anndata")
 5.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-example_anndata.R:25:1'): (code run outside of `test_that()`) ──
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-example_anndata.R:25:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-gtex_8tissues.R:53:10'): Reading H5AD works ────────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
     ▆
  1. ├─testthat::expect_warning(...) at test-gtex_8tissues.R:52:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. └─zellkonverter::readH5AD(file) at test-gtex_8tissues.R:53:10
  7.   └─basilisk::basiliskRun(...)
  8.     └─zellkonverter (local) fun(...)
  9.       └─reticulate::import("anndata")
 10.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-gtex_8tissues.R:59:1'): (code run outside of `test_that()`) ────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-gtex_8tissues.R:59:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-pegasus_marrow.R:30:5'): Reading H5AD works ────────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. └─zellkonverter::readH5AD(file) at test-pegasus_marrow.R:30:5
 2.   └─basilisk::basiliskRun(...)
 3.     └─zellkonverter (local) fun(...)
 4.       └─reticulate::import("anndata")
 5.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-pegasus_marrow.R:34:1'): (code run outside of `test_that()`) ───
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-pegasus_marrow.R:34:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scIB_pancreas.R:15:5'): Reading H5AD works ─────────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. └─zellkonverter::readH5AD(file) at test-scIB_pancreas.R:15:5
 2.   └─basilisk::basiliskRun(...)
 3.     └─zellkonverter (local) fun(...)
 4.       └─reticulate::import("anndata")
 5.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scIB_pancreas.R:19:1'): (code run outside of `test_that()`) ────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-scIB_pancreas.R:19:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scanpy_pbmc3k.R:25:5'): Reading H5AD works ─────────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. └─zellkonverter::readH5AD(file) at test-scanpy_pbmc3k.R:25:5
 2.   └─basilisk::basiliskRun(...)
 3.     └─zellkonverter (local) fun(...)
 4.       └─reticulate::import("anndata")
 5.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scanpy_pbmc3k.R:29:1'): (code run outside of `test_that()`) ────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-scanpy_pbmc3k.R:29:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scanpy_trajectory.R:22:5'): Reading H5AD works ─────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. └─zellkonverter::readH5AD(file) at test-scanpy_trajectory.R:22:5
 2.   └─basilisk::basiliskRun(...)
 3.     └─zellkonverter (local) fun(...)
 4.       └─reticulate::import("anndata")
 5.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scanpy_trajectory.R:26:1'): (code run outside of `test_that()`) ──
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-scanpy_trajectory.R:26:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scvelo_pancreas.R:38:5'): Reading H5AD works ───────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. └─zellkonverter::readH5AD(file) at test-scvelo_pancreas.R:38:5
 2.   └─basilisk::basiliskRun(...)
 3.     └─zellkonverter (local) fun(...)
 4.       └─reticulate::import("anndata")
 5.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scvelo_pancreas.R:42:1'): (code run outside of `test_that()`) ──
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-scvelo_pancreas.R:42:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scvi_citeseq.R:24:5'): Reading H5AD works ──────────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
     ▆
  1. ├─testthat::expect_warning(readH5AD(file)) at test-scvi_citeseq.R:24:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. └─zellkonverter::readH5AD(file)
  7.   └─basilisk::basiliskRun(...)
  8.     └─zellkonverter (local) fun(...)
  9.       └─reticulate::import("anndata")
 10.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-scvi_citeseq.R:28:1'): (code run outside of `test_that()`) ─────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-scvi_citeseq.R:28:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-squidpy_visium.R:37:5'): Reading H5AD works ────────────────────
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. └─zellkonverter::readH5AD(file) at test-squidpy_visium.R:37:5
 2.   └─basilisk::basiliskRun(...)
 3.     └─zellkonverter (local) fun(...)
 4.       └─reticulate::import("anndata")
 5.         └─reticulate:::py_module_import(module, convert = convert)
── Error ('test-squidpy_visium.R:41:1'): (code run outside of `test_that()`) ───
<python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
Run `reticulate::py_last_error()` for details.
Backtrace:
    ▆
 1. ├─base::suppressWarnings(readH5AD(file)) at test-squidpy_visium.R:41:1
 2. │ └─base::withCallingHandlers(...)
 3. └─zellkonverter::readH5AD(file)
 4.   └─basilisk::basiliskRun(...)
 5.     └─zellkonverter (local) fun(...)
 6.       └─reticulate::import("anndata")
 7.         └─reticulate:::py_module_import(module, convert = convert)

[ FAIL 20 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no zellkonverter_1.14.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.19-bioc-longtests/meat/zellkonverter.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'zellkonverter/DESCRIPTION' ... OK
* this is package 'zellkonverter' version '1.14.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'zellkonverter' can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See 'E:/biocbuild/bbs-3.19-bioc-longtests/meat/zellkonverter.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'longtests/testthat.R' failed.
Last 13 lines of output:
  Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'anndata'
  Run `reticulate::py_last_error()` for details.
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(readH5AD(file)) at test-squidpy_visium.R:41:1
   2. │ └─base::withCallingHandlers(...)
   3. └─zellkonverter::readH5AD(file)
   4.   └─basilisk::basiliskRun(...)
   5.     └─zellkonverter (local) fun(...)
   6.       └─reticulate::import("anndata")
   7.         └─reticulate:::py_module_import(module, convert = convert)
  
  [ FAIL 20 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR, 1 NOTE
See
  'E:/biocbuild/bbs-3.19-bioc-longtests/meat/zellkonverter.Rcheck/00check.log'
for details.

* installing *source* package 'zellkonverter' ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (zellkonverter)