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BioC 3.2: BUILD BIN report for CopyNumber450k on oaxaca

This page was generated on 2016-04-23 10:27:35 -0700 (Sat, 23 Apr 2016).

Package 223/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CopyNumber450k 1.6.0
Simon Papillon-Cavanagh
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/CopyNumber450k
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CopyNumber450k
Version: 1.6.0
Command: rm -rf CopyNumber450k.buildbin-libdir && mkdir CopyNumber450k.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CopyNumber450k_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CopyNumber450k.buildbin-libdir
StartedAt: 2016-04-23 05:35:40 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:36:11 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 31.3 seconds
RetCode: 0
Status:  OK 
PackageFile: CopyNumber450k_1.6.0.tgz
PackageFileSize: 403.1 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf CopyNumber450k.buildbin-libdir && mkdir CopyNumber450k.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CopyNumber450k_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CopyNumber450k.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CopyNumber450k.buildbin-libdir CopyNumber450k_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CopyNumber450k’ ...
** R
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Creating a new generic function for ‘plotSample’ in package ‘CopyNumber450k’
Creating a new generic function for ‘plotPCA’ in package ‘CopyNumber450k’
Creating a generic function for ‘write.csv’ from package ‘utils’ in package ‘CopyNumber450k’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Warning: multiple methods tables found for ‘plotPCA’
* DONE (CopyNumber450k)