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BioC 3.2: INSTALL report for lumi on oaxaca

This page was generated on 2016-04-23 10:23:36 -0700 (Sat, 23 Apr 2016).

Package 577/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lumi 2.22.1
Pan Du
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/lumi
Last Changed Rev: 112484 / Revision: 116712
Last Changed Date: 2016-01-12 13:32:17 -0800 (Tue, 12 Jan 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: lumi
Version: 2.22.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL lumi
StartedAt: 2016-04-22 17:28:19 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 17:28:51 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 32.3 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL lumi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library’
* installing *source* package ‘lumi’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
** help
Warning: bad markup (extra space?) at lumiMethyR.Rd:18:16
Warning: bad markup (extra space?) at lumiMethyR.Rd:19:28
Warning: bad markup (extra space?) at lumiMethyR.Rd:20:13
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
* DONE (lumi)